OncoDB: an interactive online database for analysis of gene expression and viral infection in cancer

G Tang, M Cho, X Wang - Nucleic Acids Research, 2022 - academic.oup.com
Large-scale multi-omics datasets, most prominently from the TCGA consortium, have been
made available to the public for systematic characterization of human cancers. However, to …

EWAS Open Platform: integrated data, knowledge and toolkit for epigenome-wide association study

Z Xiong, F Yang, M Li, Y Ma, W Zhao… - Nucleic Acids …, 2022 - academic.oup.com
Abstract Epigenome-Wide Association Study (EWAS) has become a standard strategy to
discover DNA methylation variation of different phenotypes. Since 2018, we have developed …

A critical review of datasets and computational suites for improving cancer theranostics and biomarker discovery

G Ashok, S Ramaiah - Medical Oncology, 2022 - Springer
Cancer has been constantly evolving and so is the research pertaining to cancer diagnosis
and therapeutic regimens. Early detection and specific therapeutics are the key features of …

Krüppel-like factor-9 and Krüppel-like factor-13: highly related, multi-functional, transcriptional repressors and activators of oncogenesis

FA Simmen, I Alhallak, RCM Simmen - Cancers, 2023 - mdpi.com
Simple Summary Krüppel-like Factor-9 (KLF9) and Krüppel-like Factor-13 (KLF13) are
highly related proteins that function as inducers and/or repressors of specific target gene …

DNA-methylation signature accurately differentiates pancreatic cancer from chronic pancreatitis in tissue and plasma

Y Wu, I Seufert, FN Al-Shaheri, R Kurilov, AS Bauer… - Gut, 2023 - gut.bmj.com
Objective Pancreatic ductal adenocarcinoma (PDAC) is a lethal malignancy. Differentiation
from chronic pancreatitis (CP) is currently inaccurate in about one-third of cases …

ASMdb: a comprehensive database for allele-specific DNA methylation in diverse organisms

Q Zhou, P Guan, Z Zhu, S Cheng, C Zhou… - Nucleic acids …, 2022 - academic.oup.com
DNA methylation is known to be the most stable epigenetic modification and has been
extensively studied in relation to cell differentiation, development, X chromosome …

MethMarkerDB: a comprehensive cancer DNA methylation biomarker database

Z Zhu, Q Zhou, Y Sun, F Lai, Z Wang… - Nucleic Acids …, 2024 - academic.oup.com
DNA methylation plays a crucial role in tumorigenesis and tumor progression, sparking
substantial interest in the clinical applications of cancer DNA methylation biomarkers …

Comprehensive analysis of TLX2 in pan cancer as a prognostic and immunologic biomarker and validation in ovarian cancer

B Chen, X Ding, A Wan, X Qi, X Lin, H Wang, W Mu… - Scientific Reports, 2023 - nature.com
T cell leukemia homeobox 2 (TLX2) plays an important role in some tumors. Bioinformatics
and experimental validation represent a useful way to explore the mechanisms and …

[HTML][HTML] CENPO is associated with immune cell infiltration and is a potential diagnostic and prognostic marker for hepatocellular carcinoma

K He, M Xie, J Li, Y He, Y Yin - International Journal of General …, 2022 - ncbi.nlm.nih.gov
Purpose To examine the expression, clinical significance, and potential regulatory
mechanism of centromere protein O (CENPO) in hepatocellular carcinoma (HCC). Methods …

The effect of benzo [alpha] pyrene on DNA methylation and telomerase activity in human normal and cancer cells

R Zarei, D Moghadam, MM Sarabi, F Naghibalhossaini - Toxicology in Vitro, 2022 - Elsevier
Abstract Benzo [a] pyrene (BaP) exposure has been associated with an increased risk of
carcinogenesis. We investigated the effects of BaP on cell viability, the promoter methylation …