MRtrix3: A fast, flexible and open software framework for medical image processing and visualisation

JD Tournier, R Smith, D Raffelt, R Tabbara… - Neuroimage, 2019 - Elsevier
MRtrix3 is an open-source, cross-platform software package for medical image processing,
analysis and visualisation, with a particular emphasis on the investigation of the brain using …

[HTML][HTML] Quantitative mapping of the brain's structural connectivity using diffusion MRI tractography: A review

F Zhang, A Daducci, Y He, S Schiavi, C Seguin… - Neuroimage, 2022 - Elsevier
Diffusion magnetic resonance imaging (dMRI) tractography is an advanced imaging
technique that enables in vivo reconstruction of the brain's white matter connections at …

Diffusion MRI fiber tractography of the brain

B Jeurissen, M Descoteaux, S Mori… - NMR in …, 2019 - Wiley Online Library
The ability of fiber tractography to delineate non‐invasively the white matter fiber pathways
of the brain raises possibilities for clinical applications and offers enormous potential for …

The challenge of mapping the human connectome based on diffusion tractography

KH Maier-Hein, PF Neher, JC Houde, MA Côté… - Nature …, 2017 - nature.com
Tractography based on non-invasive diffusion imaging is central to the study of human brain
connectivity. To date, the approach has not been systematically validated in ground truth …

Mapping structural connectivity using diffusion MRI: challenges and opportunities

CH Yeh, DK Jones, X Liang… - Journal of Magnetic …, 2021 - Wiley Online Library
Diffusion MRI‐based tractography is the most commonly‐used technique when inferring the
structural brain connectome, ie, the comprehensive map of the connections in the brain. The …

Design and validation of diffusion MRI models of white matter

IO Jelescu, MD Budde - Frontiers in physics, 2017 - frontiersin.org
Diffusion MRI is arguably the method of choice for characterizing white matter microstructure
in vivo. Over the typical duration of diffusion encoding, the displacement of water molecules …

An anatomically curated fiber clustering white matter atlas for consistent white matter tract parcellation across the lifespan

F Zhang, Y Wu, I Norton, L Rigolo, Y Rathi, N Makris… - Neuroimage, 2018 - Elsevier
This work presents an anatomically curated white matter atlas to enable consistent white
matter tract parcellation across different populations. Leveraging a well-established …

An open MRI dataset for multiscale neuroscience

J Royer, R Rodríguez-Cruces, S Tavakol, S Larivière… - Scientific data, 2022 - nature.com
Multimodal neuroimaging grants a powerful window into the structure and function of the
human brain at multiple scales. Recent methodological and conceptual advances have …

Differences in subcortico-cortical interactions identified from connectome and microcircuit models in autism

B Park, SJ Hong, SL Valk, C Paquola… - Nature …, 2021 - nature.com
The pathophysiology of autism has been suggested to involve a combination of both
macroscale connectome miswiring and microcircuit anomalies. Here, we combine …

[HTML][HTML] Disentangling micro from mesostructure by diffusion MRI: a Bayesian approach

M Reisert, E Kellner, B Dhital, J Hennig, VG Kiselev - Neuroimage, 2017 - Elsevier
Diffusion-sensitized magnetic resonance imaging probes the cellular structure of the human
brain, but the primary microstructural information gets lost in averaging over higher-level …