Single-cell RNA-seq: advances and future challenges

AE Saliba, AJ Westermann, SA Gorski… - Nucleic acids …, 2014 - academic.oup.com
Phenotypically identical cells can dramatically vary with respect to behavior during their
lifespan and this variation is reflected in their molecular composition such as the …

Computational deconvolution of transcriptomics data from mixed cell populations

F Avila Cobos, J Vandesompele, P Mestdagh… - …, 2018 - academic.oup.com
Gene expression analyses of bulk tissues often ignore cell type composition as an important
confounding factor, resulting in a loss of signal from lowly abundant cell types. In this review …

[HTML][HTML] Single-cell triple omics sequencing reveals genetic, epigenetic, and transcriptomic heterogeneity in hepatocellular carcinomas

Y Hou, H Guo, C Cao, X Li, B Hu, P Zhu, X Wu, L Wen… - Cell research, 2016 - nature.com
Single-cell genome, DNA methylome, and transcriptome sequencing methods have been
separately developed. However, to accurately analyze the mechanism by which …

Cellular heterogeneity and molecular evolution in cancer

V Almendro, A Marusyk, K Polyak - Annual Review of Pathology …, 2013 - annualreviews.org
Intratumor heterogeneity represents a major obstacle to effective cancer treatment and
personalized medicine. However, investigators are now elucidating intratumor heterogeneity …

Origins of regulated cell-to-cell variability

B Snijder, L Pelkmans - Nature reviews Molecular cell biology, 2011 - nature.com
Single-cell measurements and lineage-tracing experiments are revealing that phenotypic
cell-to-cell variability is often the result of deterministic processes, despite the existence of …

An analysis of critical factors for quantitative immunoblotting

KA Janes - Science signaling, 2015 - science.org
Immunoblotting (also known as Western blotting) combined with digital image analysis can
be a reliable method for analyzing the abundance of proteins and protein modifications, but …

[HTML][HTML] Astrocytic trans-differentiation completes a multicellular paracrine feedback loop required for medulloblastoma tumor growth

M Yao, PB Ventura, Y Jiang, FJ Rodriguez, L Wang… - Cell, 2020 - cell.com
The tumor microenvironment (TME) is critical for tumor progression. However, the
establishment and function of the TME remain obscure because of its complex cellular …

Myb10‐D confers PHS‐3D resistance to pre‐harvest sprouting by regulating NCED in ABA biosynthesis pathway of wheat

J Lang, Y Fu, Y Zhou, M Cheng, M Deng, M Li… - New …, 2021 - Wiley Online Library
Summary Pre‐harvest sprouting (PHS), the germination of grain before harvest, is a serious
problem resulting in wheat yield and quality losses. Here, we mapped the PHS resistance …

Surviving apoptosis: life–death signaling in single cells

DA Flusberg, PK Sorger - Trends in cell biology, 2015 - cell.com
Tissue development and homeostasis are regulated by opposing pro-survival and pro-death
signals. An interesting feature of the Tumor Necrosis Factor (TNF) family of ligands is that …

[HTML][HTML] Single cell transcriptional profiling reveals heterogeneity of human induced pluripotent stem cells

KH Narsinh, N Sun, V Sanchez-Freire… - The Journal of …, 2011 - Am Soc Clin Investig
Human induced pluripotent stem cells (hiPSCs) and human embryonic stem cells (hESCs)
are promising candidate cell sources for regenerative medicine. However, despite the …