On virus growth and form

R Zandi, B Dragnea, A Travesset, R Podgornik - Physics Reports, 2020 - Elsevier
We review approaches aimed at deciphering the physical mechanisms responsible for viral
structure and assembly. We discuss the basic principles of condensed matter physics …

[HTML][HTML] Nature׳ s favorite building block: Deciphering folding and capsid assembly of proteins with the HK97-fold

MM Suhanovsky, CM Teschke - Virology, 2015 - Elsevier
For many (if not all) bacterial and archaeal tailed viruses and eukaryotic Herpesvirdae the
HK97-fold serves as the major architectural element in icosahedral capsid formation while …

Why large icosahedral viruses need scaffolding proteins

S Li, P Roy, A Travesset… - Proceedings of the …, 2018 - National Acad Sciences
While small single-stranded viral shells encapsidate their genome spontaneously, many
large viruses, such as the herpes simplex virus or infectious bursal disease virus (IBDV) …

Capsids and genomes of jumbo-sized bacteriophages reveal the evolutionary reach of the HK97 fold

J Hua, A Huet, CA Lopez, K Toropova, WH Pope… - MBio, 2017 - Am Soc Microbiol
Large icosahedral viruses that infect bacteria represent an extreme of the coevolution of
capsids and the genomes they accommodate. One subset of these large viruses is the …

[HTML][HTML] Predicting the capsid architecture of phages from metagenomic data

DY Lee, C Bartels, K McNair, RA Edwards… - Computational and …, 2022 - Elsevier
Tailed phages are viruses that infect bacteria and are the most abundant biological entities
on Earth. Their ecological, evolutionary, and biogeochemical roles in the planet stem from …

Metagenomic comparisons reveal a highly diverse and unique viral community in a seasonally fluctuating hypersaline microbial mat

AM Cisneros-Martínez, LE Eguiarte… - Microbial …, 2023 - microbiologyresearch.org
In spring 2016, a shallow hypersaline pond (50× 25 m) was found in the Cuatro Cienegas
Basin (CCB). This pond, known as Archaean Domes (AD) because of its elastic microbial …

[HTML][HTML] The missing tailed phages: prediction of small capsid candidates

A Luque, S Benler, DY Lee, C Brown, S White - Microorganisms, 2020 - mdpi.com
Tailed phages are the most abundant and diverse group of viruses on the planet. Yet, the
smallest tailed phages display relatively complex capsids and large genomes compared to …

Diversity and conservation of the genome architecture of phages infecting the Alphaproteobacteria

JR Hyde, T Armond, JA Herring, S Hope… - Microbiology …, 2024 - Am Soc Microbiol
Bacteriophages are viruses that are only capable of replicating inside a suitable bacterial
host cell. Here, we performed a comprehensive meta-analysis of all 103 publicly available …

Molecular characterization of a novel temperate Sinorhizobium bacteriophage, ФLM21, encoding DNA methyltransferase with CcrM-like specificity

L Dziewit, K Oscik, D Bartosik, M Radlinska - Journal of virology, 2014 - Am Soc Microbiol
ABSTRACT ΦLM21 is a temperate phage isolated from Sinorhizobium sp. strain LM21
(Alphaproteobacteria). Genomic analysis and electron microscopy suggested that ΦLM21 is …

[HTML][HTML] Diversity of Sinorhizobium (Ensifer) meliloti Bacteriophages in the Rhizosphere of Medicago marina: Myoviruses, Filamentous and N4-Like Podovirus

MT Cubo, C Alías-Villegas, E Balsanelli… - Frontiers in …, 2020 - frontiersin.org
Using different Sinorhizobium meliloti strains as hosts, we isolated eight new virulent
phages from the rhizosphere of the coastal legume Medicago marina. Half of the isolated …