The population genetics of pathogenic Escherichia coli
E Denamur, O Clermont, S Bonacorsi… - Nature Reviews …, 2021 - nature.com
Escherichia coli is a commensal of the vertebrate gut that is increasingly involved in various
intestinal and extra-intestinal infections as an opportunistic pathogen. Numerous pathotypes …
intestinal and extra-intestinal infections as an opportunistic pathogen. Numerous pathotypes …
The EnteroBase user's guide, with case studies on Salmonella transmissions, Yersinia pestis phylogeny, and Escherichia core genomic diversity
EnteroBase is an integrated software environment that supports the identification of global
population structures within several bacterial genera that include pathogens. Here, we …
population structures within several bacterial genera that include pathogens. Here, we …
Escherichia coli Sequence Type 410 Is Causing New International High-Risk Clones
Escherichia coli sequence type 410 (ST410) has been reported worldwide as an
extraintestinal pathogen associated with resistance to fluoroquinolones, third-generation …
extraintestinal pathogen associated with resistance to fluoroquinolones, third-generation …
Structural and functional characterization of the FimH adhesin of uropathogenic Escherichia coli and its novel applications
N Foroogh, M Rezvan, K Ahmad, S Mahmood - Microbial pathogenesis, 2021 - Elsevier
Type 1 fimbriae are responsible for bacterial pathogenicity and biofilm production, which are
important virulence factors in uropathogenic Escherichia coli strains. Many articles are …
important virulence factors in uropathogenic Escherichia coli strains. Many articles are …
TORMES: an automated pipeline for whole bacterial genome analysis
NM Quijada, D Rodríguez-Lázaro, JM Eiros… - …, 2019 - academic.oup.com
Abstract Motivation The progress of High Throughput Sequencing (HTS) technologies and
the reduction in the sequencing costs are such that Whole Genome Sequencing (WGS) …
the reduction in the sequencing costs are such that Whole Genome Sequencing (WGS) …
Emergence and dissemination of antimicrobial resistance in Escherichia coli causing bloodstream infections in Norway in 2002–17: a nationwide, longitudinal …
Background The clonal diversity underpinning trends in multidrug resistant Escherichia coli
causing bloodstream infections remains uncertain. We aimed to determine the contribution …
causing bloodstream infections remains uncertain. We aimed to determine the contribution …
Horizontally acquired papGII-containing pathogenicity islands underlie the emergence of invasive uropathogenic Escherichia coli lineages
Escherichia coli is the leading cause of urinary tract infection, one of the most common
bacterial infections in humans. Despite this, a genomic perspective is lacking regarding the …
bacterial infections in humans. Despite this, a genomic perspective is lacking regarding the …
Hospital and community wastewater as a source of multidrug-resistant ESBL-producing Escherichia coli
L Davidova-Gerzova, J Lausova, I Sukkar… - Frontiers in Cellular …, 2023 - frontiersin.org
Introduction Hospitals and wastewater are recognized hot spots for the selection and
dissemination of antibiotic-resistant bacteria to the environment, but the total participation of …
dissemination of antibiotic-resistant bacteria to the environment, but the total participation of …
Epistatic interactions between the high pathogenicity island and other iron uptake systems shape Escherichia coli extra-intestinal virulence
The intrinsic virulence of extra-intestinal pathogenic Escherichia coli is associated with
numerous chromosomal and/or plasmid-borne genes, encoding diverse functions such as …
numerous chromosomal and/or plasmid-borne genes, encoding diverse functions such as …
Phage therapy related microbial succession associated with successful clinical outcome for a recurrent urinary tract infection
We rationally designed a bacteriophage cocktail to treat a 56-year-old male liver transplant
patient with complex, recurrent prostate and urinary tract infections caused by an extended …
patient with complex, recurrent prostate and urinary tract infections caused by an extended …