Computational methods for analysing multiscale 3D genome organization
Recent progress in whole-genome mapping and imaging technologies has enabled the
characterization of the spatial organization and folding of the genome in the nucleus. In …
characterization of the spatial organization and folding of the genome in the nucleus. In …
[HTML][HTML] Single-cell DNA methylome and 3D multi-omic atlas of the adult mouse brain
Cytosine DNA methylation is essential in brain development and is implicated in various
neurological disorders. Understanding DNA methylation diversity across the entire brain in a …
neurological disorders. Understanding DNA methylation diversity across the entire brain in a …
[HTML][HTML] RNA-mediated symmetry breaking enables singular olfactory receptor choice
Olfactory receptor (OR) choice provides an extreme example of allelic competition for
transcriptional dominance, where every olfactory neuron stably transcribes one of …
transcriptional dominance, where every olfactory neuron stably transcribes one of …
[HTML][HTML] Single-cell multiplex chromatin and RNA interactions in ageing human brain
Dynamically organized chromatin complexes often involve multiplex chromatin interactions
and sometimes chromatin-associated RNA,–. Chromatin complex compositions change …
and sometimes chromatin-associated RNA,–. Chromatin complex compositions change …
[HTML][HTML] Gene-environmental regulation of the postnatal post-mitotic neuronal maturation
GS Prince, M Reynolds, V Martina, HS Sun - Trends in Genetics, 2024 - cell.com
Embryonic neurodevelopment, particularly neural progenitor differentiation into post-mitotic
neurons, has been extensively studied. While the number and composition of post-mitotic …
neurons, has been extensively studied. While the number and composition of post-mitotic …
[HTML][HTML] Cell-type-specific 3D-genome organization and transcription regulation in the brain
Abstract 3D organization of the genome plays a critical role in regulating gene expression.
However, it remains unclear how chromatin organization differs among different cell types in …
However, it remains unclear how chromatin organization differs among different cell types in …
[HTML][HTML] Three-dimensional chromatin reorganization regulates B cell development during ageing
The contribution of three-dimensional genome organization to physiological ageing is not
well known. Here we show that large-scale chromatin reorganization distinguishes young …
well known. Here we show that large-scale chromatin reorganization distinguishes young …
Chromosome Structure I: Loop extrusion or boundary: boundary pairing?
Two different models have been proposed to explain how the endpoints of chromatin looped
domains (“TADs”) in eukaryotic chromosomes are determined. In the first, a cohesin complex …
domains (“TADs”) in eukaryotic chromosomes are determined. In the first, a cohesin complex …
Epigenome erosion in Alzheimer's disease brain cells and induced neurons
Late-onset Alzheimer's disease (LOAD) is typically sporadic, correlated only to advanced
age, and has no clear genetic risk factors. The sporadic nature of LOAD presents a …
age, and has no clear genetic risk factors. The sporadic nature of LOAD presents a …
Chromosomal contacts change with age
S Akbarian, H Won - Science, 2023 - science.org
Cell-specific transcriptomic and epigenomic programming during human brain development
and differentiation are associated with dynamic changes in chromosomal conformations …
and differentiation are associated with dynamic changes in chromosomal conformations …