[HTML][HTML] Single-cell DNA methylome and 3D multi-omic atlas of the adult mouse brain

H Liu, Q Zeng, J Zhou, A Bartlett, BA Wang, P Berube… - Nature, 2023 - nature.com
Cytosine DNA methylation is essential in brain development and is implicated in various
neurological disorders. Understanding DNA methylation diversity across the entire brain in a …

[HTML][HTML] Single-cell multiplex chromatin and RNA interactions in ageing human brain

X Wen, Z Luo, W Zhao, R Calandrelli, TC Nguyen… - Nature, 2024 - nature.com
Dynamically organized chromatin complexes often involve multiplex chromatin interactions
and sometimes chromatin-associated RNA,–. Chromatin complex compositions change …

[HTML][HTML] Gene-environmental regulation of the postnatal post-mitotic neuronal maturation

GS Prince, M Reynolds, V Martina, HS Sun - Trends in Genetics, 2024 - cell.com
Embryonic neurodevelopment, particularly neural progenitor differentiation into post-mitotic
neurons, has been extensively studied. While the number and composition of post-mitotic …

[HTML][HTML] Three-dimensional chromatin reorganization regulates B cell development during ageing

F Ma, Y Cao, H Du, FZ Braikia, L Zong… - Nature Cell …, 2024 - nature.com
The contribution of three-dimensional genome organization to physiological ageing is not
well known. Here we show that large-scale chromatin reorganization distinguishes young …

Chromosome Structure I: Loop extrusion or boundary: boundary pairing?

X Bing, W Ke, M Fujioka, A Kurbidaeva, S Levitt… - bioRxiv, 2023 - biorxiv.org
Two different models have been proposed to explain how the endpoints of chromatin looped
domains (“TADs”) in eukaryotic chromosomes are determined. In the first, a cohesin complex …

Cell-type-specific 3D-genome organization and transcription regulation in the brain

S Liu, P Zheng, CY Wang, BB Jia, NR Zemke, B Ren… - bioRxiv, 2023 - biorxiv.org
3D organization of the genome plays a critical role in regulating gene expression. However,
it remains unclear how chromatin organization differs among different cell types in the brain …

Chromosomal contacts change with age

S Akbarian, H Won - Science, 2023 - science.org
Cell-specific transcriptomic and epigenomic programming during human brain development
and differentiation are associated with dynamic changes in chromosomal conformations …

[HTML][HTML] Single-cell multiplex chromatin and RNA interactions in aging human brain

X Wen, Z Luo, W Zhao, R Calandrelli, TC Nguyen… - bioRxiv, 2023 - ncbi.nlm.nih.gov
The dynamically organized chromatin complexes often involve multiplex chromatin
interactions 16 and sometimes chromatin-associated RNA. Here, we introduce the Multi …

Epigenome erosion in Alzheimer's disease brain cells and induced neurons

B Wang, J Jones, J Zhou, W Tian, Y Wu, W Wang… - bioRxiv, 2023 - biorxiv.org
Late-onset Alzheimer's disease (LOAD) is typically sporadic, correlated only to advanced
age, and has no clear genetic risk factors. The sporadic nature of LOAD presents a …

Tri-omic mapping revealed concerted dynamics of 3D epigenome and transcriptome in brain cells

H Chai, X Huang, G Xiong, J Huang, KK Pels, L Meng… - bioRxiv, 2024 - biorxiv.org
Exploring the genomic basis of transcriptional programs has been a longstanding research
focus. Here, we report a high-throughput single-cell tri-omic method to capture chromatin …