Mapping genes for complex traits in domestic animals and their use in breeding programmes

ME Goddard, BJ Hayes - Nature Reviews Genetics, 2009 - nature.com
Genome-wide panels of SNPs have recently been used in domestic animal species to map
and identify genes for many traits and to select genetically desirable livestock. This has led …

Variable tandem repeats accelerate evolution of coding and regulatory sequences

R Gemayel, MD Vinces, M Legendre… - Annual review of …, 2010 - annualreviews.org
Genotype-to-phenotype mapping commonly focuses on two major classes of mutations:
single nucleotide polymorphisms (SNPs) and copy number variation (CNV). Here, we …

Whole genome sequencing of canids reveals genomic regions under selection and variants influencing morphology

J Plassais, J Kim, BW Davis, DM Karyadi… - Nature …, 2019 - nature.com
Domestic dog breeds are characterized by an unrivaled diversity of morphologic traits and
breed-associated behaviors resulting from human selective pressures. To identify the …

Population genomics of parallel adaptation in threespine stickleback using sequenced RAD tags

PA Hohenlohe, S Bassham, PD Etter, N Stiffler… - PLoS …, 2010 - journals.plos.org
Next-generation sequencing technology provides novel opportunities for gathering genome-
scale sequence data in natural populations, laying the empirical foundation for the evolving …

Rethinking dog domestication by integrating genetics, archeology, and biogeography

G Larson, EK Karlsson, A Perri… - Proceedings of the …, 2012 - National Acad Sciences
The dog was the first domesticated animal but it remains uncertain when the domestication
process began and whether it occurred just once or multiple times across the Northern …

The evolutionary history of dogs in the Americas

M Ní Leathlobhair, AR Perri, EK Irving-Pease, KE Witt… - Science, 2018 - science.org
Dogs were present in the Americas before the arrival of European colonists, but the origin
and fate of these precontact dogs are largely unknown. We sequenced 71 mitochondrial and …

A comprehensive biomedical variant catalogue based on whole genome sequences of 582 dogs and eight wolves

V Jagannathan, C Drögemüller, T Leeb… - Animal …, 2019 - Wiley Online Library
The domestic dog serves as an excellent model to investigate the genetic basis of disease.
More than 400 heritable traits analogous to human diseases have been described in dogs …

A simple genetic architecture underlies morphological variation in dogs

AR Boyko, P Quignon, L Li, JJ Schoenebeck… - PLoS …, 2010 - journals.plos.org
Domestic dogs exhibit tremendous phenotypic diversity, including a greater variation in body
size than any other terrestrial mammal. Here, we generate a high density map of canine …

Coat variation in the domestic dog is governed by variants in three genes

E Cadieu, MW Neff, P Quignon, K Walsh, K Chase… - science, 2009 - science.org
Coat color and type are essential characteristics of domestic dog breeds. Although the
genetic basis of coat color has been well characterized, relatively little is known about the …

An Expressed Fgf4 Retrogene Is Associated with Breed-Defining Chondrodysplasia in Domestic Dogs

HG Parker, BM VonHoldt, P Quignon, EH Margulies… - Science, 2009 - science.org
Retrotransposition of processed mRNAs is a common source of novel sequence acquired
during the evolution of genomes. Although the vast majority of retroposed gene copies, or …