On the expanding roles of tRNA fragments in modulating cell behavior

R Magee, I Rigoutsos - Nucleic acids research, 2020 - academic.oup.com
The fragments that derive from transfer RNAs (tRNAs) are an emerging category of
regulatory RNAs. Known as tRFs, these fragments were reported for the first time only a …

Cytonuclear integration and co-evolution

DB Sloan, JM Warren, AM Williams, Z Wu… - Nature Reviews …, 2018 - nature.com
The partitioning of genetic material between the nucleus and cytoplasmic (mitochondrial and
plastid) genomes within eukaryotic cells necessitates coordinated integration between these …

Angiogenin generates specific stress-induced tRNA halves and is not involved in tRF-3–mediated gene silencing

Z Su, C Kuscu, A Malik, E Shibata, A Dutta - Journal of Biological Chemistry, 2019 - ASBMB
tRNA fragments (tRFs) and tRNA halves have been implicated in various cellular processes,
including gene silencing, translation, stress granule assembly, cell differentiation …

Rock, scissors, paper: How RNA structure informs function

SM Assmann, HL Chou, PC Bevilacqua - The Plant Cell, 2023 - academic.oup.com
RNA can fold back on itself to adopt a wide range of structures. These range from relatively
simple hairpins to intricate 3D folds and can be accompanied by regulatory interactions with …

Roles of mitochondria in the hallmarks of metastasis

AD Scheid, TC Beadnell, DR Welch - British Journal of Cancer, 2021 - nature.com
Although mitochondrial contributions to cancer have been recognised for approximately a
century, given that mitochondrial DNA (mtDNA) is dwarfed by the size of the nuclear genome …

What, where, and how: regulation of translation and the translational landscape in plants

HYL Wu, J Jen, PY Hsu - The Plant Cell, 2024 - academic.oup.com
Translation is a crucial step in gene expression and plays a vital role in regulating various
aspects of plant development and environmental responses. It is a dynamic and complex …

A tRNA half modulates translation as stress response in Trypanosoma brucei

R Fricker, R Brogli, H Luidalepp, L Wyss… - Nature …, 2019 - nature.com
In the absence of extensive transcription control mechanisms the pathogenic parasite
Trypanosoma brucei crucially depends on translation regulation to orchestrate gene …

Small non-coding RNAs derived from eukaryotic ribosomal RNA

M Lambert, A Benmoussa, P Provost - Non-coding RNA, 2019 - mdpi.com
The advent of RNA-sequencing (RNA-Seq) technologies has markedly improved our
knowledge and expanded the compendium of small non-coding RNAs, most of which derive …

Drosophila tsRNAs preferentially suppress general translation machinery via antisense pairing and participate in cellular starvation response

S Luo, F He, J Luo, S Dou, Y Wang… - Nucleic acids …, 2018 - academic.oup.com
Transfer RNA-derived small RNAs (tsRNAs) are an emerging class of small RNAs, yet their
regulatory roles have not been well understood. Here we studied the molecular mechanisms …

Plant RNases T2, but not Dicer-like proteins, are major players of tRNA-derived fragments biogenesis

C Megel, G Hummel, S Lalande, E Ubrig… - Nucleic Acids …, 2019 - academic.oup.com
RNA fragments deriving from tRNAs (tRFs) exist in all branches of life and the repertoire of
their biological functions regularly increases. Paradoxically, their biogenesis remains …