Why nature really chose phosphate

SCL Kamerlin, PK Sharma, RB Prasad… - Quarterly reviews of …, 2013 - cambridge.org
Phosphoryl transfer plays key roles in signaling, energy transduction, protein synthesis, and
maintaining the integrity of the genetic material. On the surface, it would appear to be a …

High-speed AFM and applications to biomolecular systems

T Ando, T Uchihashi, N Kodera - Annual review of biophysics, 2013 - annualreviews.org
Directly observing individual protein molecules in action at high spatiotemporal resolution
has long been a holy grail for biological science. This is because we long have had to infer …

High-Speed Atomic Force Microscopy Reveals Rotary Catalysis of Rotorless F1-ATPase

T Uchihashi, R Iino, T Ando, H Noji - Science, 2011 - science.org
F1 is an adenosine triphosphate (ATP)–driven motor in which three torque-generating β
subunits in the α3β3 stator ring sequentially undergo conformational changes upon ATP …

[HTML][HTML] Filming biomolecular processes by high-speed atomic force microscopy

T Ando, T Uchihashi, S Scheuring - Chemical reviews, 2014 - ACS Publications
In the history of science and technology, researchers have always undertaken endeavors to
enhance the degree of “directness of measurement”. With “directness of measurement”, we …

Drug transport mechanism of the AcrB efflux pump

KM Pos - Biochimica et Biophysica Acta (BBA)-Proteins and …, 2009 - Elsevier
In Gram-negative bacteria such as Escherichia coli and Pseudomonas aeruginosa, tripartite
multidrug efflux systems extrude cytotoxic substances from the cell directly into the medium …

Structural basis for power stroke vs. Brownian ratchet mechanisms of motor proteins

W Hwang, M Karplus - … of the National Academy of Sciences, 2019 - National Acad Sciences
Two mechanisms have been proposed for the function of motor proteins: The power stroke
and the Brownian ratchet. The former refers to generation of a large downhill free energy …

[HTML][HTML] Torque generation and elastic power transmission in the rotary FOF1-ATPase

W Junge, H Sielaff, S Engelbrecht - Nature, 2009 - nature.com
Adenosine triphosphate (ATP), the universal fuel of the cell, is synthesized from adenosine
diphosphate (ADP) and inorganic phosphate (Pi) by'ATP synthase'(FOF1-ATPase). During …

Thermodynamic efficiency and mechanochemical coupling of F1-ATPase

S Toyabe, T Watanabe-Nakayama… - Proceedings of the …, 2011 - National Acad Sciences
F1-ATPase is a nanosized biological energy transducer working as part of FoF1-ATP
synthase. Its rotary machinery transduces energy between chemical free energy and …

F1FO ATP synthase molecular motor mechanisms

WD Frasch, ZA Bukhari, S Yanagisawa - Frontiers in microbiology, 2022 - frontiersin.org
The F-ATP synthase, consisting of F1 and FO motors connected by a central rotor and the
stators, is the enzyme responsible for synthesizing the majority of ATP in all organisms. The …

Structural divergence of the rotary ATPases

SP Muench, J Trinick, MA Harrison - Quarterly reviews of biophysics, 2011 - cambridge.org
The rotary ATPase family of membrane protein complexes may have only three members,
but each one plays a fundamental role in biological energy conversion. The F1Fo-ATPase (F …