Database resources of the national genomics data center, China national center for bioinformation in 2022

Nucleic Acids Research, 2022 - academic.oup.com
Abstract The National Genomics Data Center (NGDC), part of the China National Center for
Bioinformation (CNCB), provides a family of database resources to support global research …

Integrating omics databases for enhanced crop breeding

H Chao, S Zhang, Y Hu, Q Ni, S Xin, L Zhao… - Journal of Integrative …, 2024 - degruyter.com
Crop plant breeding involves selecting and developing new plant varieties with desirable
traits such as increased yield, improved disease resistance, and enhanced nutritional value …

Database resources of the national genomics data center, China national center for bioinformation in 2023

Nucleic acids research, 2023 - academic.oup.com
Abstract The National Genomics Data Center (NGDC), part of the China National Center for
Bioinformation (CNCB), provides a family of database resources to support global academic …

Chromosome-level genomes of three key Allium crops and their trait evolution

F Hao, X Liu, B Zhou, Z Tian, L Zhou, H Zong, J Qi… - Nature …, 2023 - nature.com
Allium crop breeding remains severely hindered due to the lack of high-quality reference
genomes. Here we report high-quality chromosome-level genome assemblies for three key …

High-Quality Arabidopsis Thaliana Genome Assembly with Nanopore and HiFi Long Reads

B Wang, X Yang, Y Jia, Y Xu, P Jia… - Genomics …, 2022 - academic.oup.com
Arabidopsis thaliana is an important and long-established model species for plant molecular
biology, genetics, epigenetics, and genomics. However, the latest version of reference …

Multiple sequence alignment-based RNA language model and its application to structural inference

Y Zhang, M Lang, J Jiang, Z Gao, F Xu… - Nucleic Acids …, 2024 - academic.oup.com
Compared with proteins, DNA and RNA are more difficult languages to interpret because
four-letter coded DNA/RNA sequences have less information content than 20-letter coded …

Pervasive genome duplications across the plant tree of life and their links to major evolutionary innovations and transitions

X Qiao, S Zhang, AH Paterson - Computational and structural …, 2022 - Elsevier
Whole-genome duplication (WGD) has occurred repeatedly during plant evolution and
diversification, providing genetic layers for evolving new functions and phenotypes …

T2T-YAO: a telomere-to-telomere assembled diploid reference genome for Han Chinese

Y He, Y Chu, S Guo, J Hu, R Li, Y Zheng… - Genomics …, 2023 - academic.oup.com
Since its initial release in 2001, the human reference genome has undergone continuous
improvement in quality, and the recently released telomere-to-telomere (T2T) version—T2T …

A haplotype-resolved genome assembly of Rhododendron vialii based on PacBio HiFi reads and Hi-C data

Y Chang, R Zhang, Y Ma, W Sun - Scientific Data, 2023 - nature.com
Rhododendron vialii (subgen. Azaleastrum) is an evergreen shrub with high ornamental
value. This species has been listed as a plant species with extremely small populations …

Maternal dominance contributes to subgenome differentiation in allopolyploid fishes

MRX Xu, ZY Liao, JR Brock, K Du, GY Li… - Nature …, 2023 - nature.com
Teleost fishes, which are the largest and most diverse group of living vertebrates, have a rich
history of ancient and recent polyploidy. Previous studies of allotetraploid common carp and …