Creating and using minimizer sketches in computational genomics

H Zheng, G Marçais, C Kingsford - Journal of Computational …, 2023 - liebertpub.com
Processing large data sets has become an essential part of computational genomics.
Greatly increased availability of sequence data from multiple sources has fueled …

MSV: a modular structural variant caller that reveals nested and complex rearrangements by unifying breakends inferred directly from reads

M Schmidt, A Kutzner - Genome Biology, 2023 - Springer
Structural variant (SV) calling belongs to the standard tools of modern bioinformatics for
identifying and describing alterations in genomes. Initially, this work presents several …

Improving Performance of Multiple Sequence Alignment through Maximal Exact Match Identification

T Wehning - 2023 - essay.utwente.nl
Multiple sequence alignment is an integral part in the field of DNA analysis and genomics,
and it is necessary in order to properly identify evolutionary patterns as well as functional …

State-of-the-art structural variant calling: What went conceptually wrong and how to fix it?

M Schmidt, A Kutzner - bioRxiv, 2021 - biorxiv.org
Structural variant (SV) calling belongs to the standard tools of modern bioinformatics for
identifying and describing alterations in genomes. Initially, this work presents several …