cis-Regulatory Elements in Plant Development, Adaptation, and Evolution

AP Marand, AL Eveland, K Kaufmann… - Annual review of …, 2023 - annualreviews.org
cis-Regulatory elements encode the genomic blueprints that ensure the proper
spatiotemporal patterning of gene expression necessary for appropriate development and …

Recent advances in crop transformation technologies

Z Chen, JM Debernardi, J Dubcovsky, A Gallavotti - Nature plants, 2022 - nature.com
Agriculture is experiencing a technological inflection point in its history, while also facing
unprecedented challenges posed by human population growth and global climate changes …

A single-cell analysis of the Arabidopsis vegetative shoot apex

TQ Zhang, Y Chen, JW Wang - Developmental Cell, 2021 - cell.com
The shoot apical meristem allows for reiterative formation of new aerial structures throughout
the life cycle of a plant. We use single-cell RNA sequencing to define the cellular taxonomy …

Uncovering the transcriptional regulatory network involved in boosting wheat regeneration and transformation

X Liu, XM Bie, X Lin, M Li, H Wang, X Zhang, Y Yang… - Nature Plants, 2023 - nature.com
Genetic transformation is important for gene functional study and crop improvement.
However, it is less effective in wheat. Here we employed a multi-omic analysis strategy to …

Single-cell transcriptome atlas and chromatin accessibility landscape reveal differentiation trajectories in the rice root

TQ Zhang, Y Chen, Y Liu, WH Lin, JW Wang - Nature communications, 2021 - nature.com
Root development relies on the establishment of meristematic tissues that give rise to
distinct cell types that differentiate across defined temporal and spatial gradients. Dissection …

Comprehensive characterization of three classes of Arabidopsis SWI/SNF chromatin remodelling complexes

J Guo, G Cai, YQ Li, YX Zhang, YN Su, DY Yuan… - Nature Plants, 2022 - nature.com
Although SWI/SNF chromatin remodelling complexes are known to regulate diverse
biological functions in plants, the classification, compositions and functional mechanisms of …

[HTML][HTML] Dynamic chromatin state profiling reveals regulatory roles of auxin and cytokinin in shoot regeneration

LY Wu, GD Shang, FX Wang, J Gao, MC Wan, ZG Xu… - Developmental Cell, 2022 - cell.com
Shoot regeneration is mediated by the sequential action of two phytohormones, auxin and
cytokinin. However, the chromatin regulatory landscapes underlying this dynamic response …

Genetic and molecular control of somatic embryogenesis

C Salaün, L Lepiniec, B Dubreucq - Plants, 2021 - mdpi.com
Somatic embryogenesis is a method of asexual reproduction that can occur naturally in
various plant species and is widely used for clonal propagation, transformation and …

Single-cell resolution analysis reveals the preparation for reprogramming the fate of stem cell niche in cotton lateral meristem

X Zhu, Z Xu, G Wang, Y Cong, L Yu, R Jia, Y Qin… - Genome Biology, 2023 - Springer
Background Somatic embryogenesis is a major process for plant regeneration. However,
cell communication and the gene regulatory network responsible for cell reprogramming …

Auxin biosynthesis maintains embryo identity and growth during BABY BOOM-induced somatic embryogenesis

M Li, J Wrobel-Marek, I Heidmann, A Horstman… - Plant …, 2022 - academic.oup.com
Somatic embryogenesis is a type of plant cell totipotency where embryos develop from
nonreproductive (vegetative) cells without fertilization. Somatic embryogenesis can be …