Text-mining solutions for biomedical research: enabling integrative biology

D Rebholz-Schuhmann, A Oellrich… - Nature Reviews …, 2012 - nature.com
In response to the unbridled growth of information in literature and biomedical databases,
researchers require efficient means of handling and extracting information. As well as …

DisGeNET: a discovery platform for the dynamical exploration of human diseases and their genes

J Piñero, N Queralt-Rosinach, A Bravo, J Deu-Pons… - Database, 2015 - academic.oup.com
DisGeNET is a comprehensive discovery platform designed to address a variety of
questions concerning the genetic underpinning of human diseases. DisGeNET contains …

[HTML][HTML] Natural antimicrobials: A clean label strategy to improve the shelf life and safety of reformulated meat products

NA Santiesteban-López, JA Gómez-Salazar… - Foods, 2022 - mdpi.com
Meat is a nutrient-rich matrix for human consumption. However, it is also a suitable
environment for the proliferation of both spoilage and pathogenic microorganisms. The …

[HTML][HTML] Traceability, reproducibility and wiki-exploration for “à-la-carte” reconstructions of genome-scale metabolic models

M Aite, M Chevallier, C Frioux, C Trottier… - PLoS computational …, 2018 - journals.plos.org
Genome-scale metabolic models have become the tool of choice for the global analysis of
microorganism metabolism, and their reconstruction has attained high standards of quality …

Bio2RDF release 2: improved coverage, interoperability and provenance of life science linked data

A Callahan, J Cruz-Toledo, P Ansell… - The Semantic Web …, 2013 - Springer
Bio2RDF currently provides the largest network of Linked Data for the Life Sciences. Here,
we describe a significant update to increase the overall quality of RDFized datasets …

[HTML][HTML] Ontology-based querying with Bio2RDF's linked open data

A Callahan, J Cruz-Toledo, M Dumontier - Journal of biomedical semantics, 2013 - Springer
Background A key activity for life scientists in this post “-omics” age involves searching for
and integrating biological data from a multitude of independent databases. However, our …

Maps of medical reason: applying knowledge graphs and artificial intelligence in medical education and practice

B Cope, M Kalantzis, CX Zhai, A Krussel… - Bioinformational …, 2022 - Springer
This chapter explores the connections between the bio and the digital in the construction of
'bioinformation'and 'biodigital convergence'. The site of examination of these connections is …

A survey on knowledge representation in materials science and engineering: An ontological perspective

X Zhang, C Zhao, X Wang - Computers in Industry, 2015 - Elsevier
Informatics in materials science and engineering is playing more and more important role in
contemporary society. Intelligent applications such as new materials discovery, materials …

[HTML][HTML] Controlled vocabularies and ontologies in proteomics: overview, principles and practice

G Mayer, AR Jones, PA Binz, EW Deutsch… - … et Biophysica Acta (BBA …, 2014 - Elsevier
This paper focuses on the use of controlled vocabularies (CVs) and ontologies especially in
the area of proteomics, primarily related to the work of the Proteomics Standards Initiative …

[HTML][HTML] ReVeaLD: A user-driven domain-specific interactive search platform for biomedical research

MR Kamdar, D Zeginis, A Hasnain, S Decker… - Journal of biomedical …, 2014 - Elsevier
Bioinformatics research relies heavily on the ability to discover and correlate data from
various sources. The specialization of life sciences over the past decade, coupled with an …