16S rRNA gene copy number normalization does not provide more reliable conclusions in metataxonomic surveys
Sequencing 16S rRNA gene amplicons is the gold standard to uncover the composition of
prokaryotic communities. The presence of multiple copies of this gene makes the community …
prokaryotic communities. The presence of multiple copies of this gene makes the community …
Fungal-bacterial cooccurrence patterns differ between arbuscular mycorrhizal fungi and nonmycorrhizal fungi across soil niches
Soil bacteria and fungi are known to form niche-specific communities that differ between
actively growing and decaying roots. Yet almost nothing is known about the cross-kingdom …
actively growing and decaying roots. Yet almost nothing is known about the cross-kingdom …
Identification of heterotrophic zinc mobilization processes among bacterial strains isolated from wheat rhizosphere (Triticum aestivum L.)
B Costerousse, L Schönholzer-Mauclaire… - Applied and …, 2018 - Am Soc Microbiol
Soil and plant inoculation with heterotrophic zinc-solubilizing bacteria (ZSB) is considered a
promising approach for increasing zinc (Zn) phytoavailability and enhancing crop growth …
promising approach for increasing zinc (Zn) phytoavailability and enhancing crop growth …
Diversity of bacterial community in the oxygen minimum zones of Arabian Sea and Bay of Bengal as deduced by illumina sequencing
The Indian Ocean harbors oxygen minimum zones (OMZs) in the Arabian Sea and Bay of
Bengal, with dissolved oxygen< 20 μM, located at the mid-depths of the water column. Till …
Bengal, with dissolved oxygen< 20 μM, located at the mid-depths of the water column. Till …
Soil bacterial and fungal community structure of a rice monoculture and rice-pasture rotation systems
Rice monoculture has been the main rice-cropping system for several years. Rice-pasture
rotation system has raised in recent years as an alternative, as this practice not only …
rotation system has raised in recent years as an alternative, as this practice not only …
[HTML][HTML] Targeted metagenomics reveals inferior resilience of farm soil resistome compared to soil microbiome after manure application
Application of animal manure to soils results in the introduction of manure-derived bacteria
and their antimicrobial resistance genes (ARGs) into soils. ResCap is a novel targeted …
and their antimicrobial resistance genes (ARGs) into soils. ResCap is a novel targeted …
Effect of cropping systems after abandoned salinized farmland reclamation on soil bacterial communities in arid northwest China
Cropping systems are extensively used in northwest China, which alter the soil structure and
nutrients, causing the changes in the soil bacterial community. Although soil bacterial …
nutrients, causing the changes in the soil bacterial community. Although soil bacterial …
[HTML][HTML] Effect of riparian soil moisture on bacterial, fungal and plant communities and microbial decomposition rates in boreal stream-side forests
Riparian habitats of boreal forests are considered as hotspots for biochemical processes
and biodiversity, and varying width riparian buffers have been proposed to protect species …
and biodiversity, and varying width riparian buffers have been proposed to protect species …
[HTML][HTML] Algal richness in BSCs in forests under different management intensity with some implications for P cycling
K Glaser, K Baumann, P Leinweber… - …, 2018 - bg.copernicus.org
Biological soil crusts (BSCs) are highly important communities in drylands and disturbed
areas worldwide, where the higher vegetation is sparse, with a diverse microalgal …
areas worldwide, where the higher vegetation is sparse, with a diverse microalgal …
Different community compositions between obligate and facultative oomycete plant parasites in a landscape-scale metabarcoding survey
AM Fiore-Donno, M Bonkowski - Biology and Fertility of Soils, 2021 - Springer
Oomycetes are a ubiquitous protistan lineage including devastating crop parasites. Although
their ecology in agrosystems has been widely studied, little is known of their distribution in …
their ecology in agrosystems has been widely studied, little is known of their distribution in …