Verifiable biology

S Konur, M Gheorghe… - Journal of the Royal …, 2023 - royalsocietypublishing.org
The formalization of biological systems using computational modelling approaches as an
alternative to mathematical-based methods has recently received much interest because …

[PDF][PDF] Kernel P systems

M Gheorghe, F Ipate, C Dragomir, L Mierla… - … Brainstorming Week on …, 2012 - ibn.idsi.md
A basic P system, called kernel P system (kP system for short), covering features of different
P systems introduced and studied so far is defined and discussed. It is a relatively low level …

[HTML][HTML] kPWorkbench: A software suit for membrane systems

S Konur, L Mierlă, F Ipate, M Gheorghe - SoftwareX, 2020 - Elsevier
Membrane computing is a new natural computing paradigm inspired by the functioning and
structure of biological cells, and has been successfully applied to many different areas, from …

[HTML][HTML] Kernel P systems: from modelling to verification and testing

M Gheorghe, R Ceterchi, F Ipate, S Konur… - Theoretical Computer …, 2018 - Elsevier
A kernel P system integrates in a coherent and elegant manner some of the most
successfully used features of the P systems employed in modelling various applications. It …

[HTML][HTML] Towards a general methodology for formal verification on spiking neural P systems

MJ Pérez-Jiménez, L Valencia-Cabrera… - Theoretical Computer …, 2024 - Elsevier
P systems are non-deterministic, parallel and distributed models of computation inspired by
the behaviour and structure of living cells. Spiking neural P systems synthesise the …

An integrated model checking toolset for kernel P systems

M Gheorghe, S Konur, F Ipate, L Mierla… - … Conference, CMC 2015 …, 2015 - Springer
P systems are the computational models introduced in the context of membrane computing,
a computational paradigm within the more general area of unconventional computing …

Kernel P systems and stochastic P systems for modelling and formal verification of genetic logic gates

M Gheorghe, S Konur, F Ipate - Advances in Unconventional Computing …, 2017 - Springer
P systems are the computational models of membrane computing, a computing paradigm
within natural computing area inspired by the structure and behaviour of the living cell. In …

Extended simulation and verification platform for kernel P systems

ME Bakir, F Ipate, S Konur, L Mierla… - … Conference, CMC 2014 …, 2014 - Springer
Kernel P systems integrate in a coherent and elegant manner many of the features of
different P system variants, successfully used for modelling various applications. In this …

A property-driven methodology for formal analysis of synthetic biology systems

S Konur, M Gheorghe - IEEE/ACM Transactions on …, 2014 - ieeexplore.ieee.org
This paper proposes a formal methodology to analyse bio-systems, in particular synthetic
biology systems. An integrative analysis perspective combining different model checking …

Conventional verification for unconventional computing: a genetic XOR gate example

S Konur, M Gheorghe, C Dragomir… - Fundamenta …, 2014 - content.iospress.com
As unconventional computation matures and non-standard programming frameworks are
demonstrated, the need for formal verification will become more prevalent. This is so …