Peptidomics
Peptides are biopolymers, typically consisting of 2–50 amino acids. They are biologically
produced by the cellular ribosomal machinery or by non-ribosomal enzymes and …
produced by the cellular ribosomal machinery or by non-ribosomal enzymes and …
Challenges and best practices in omics benchmarking
TG Brooks, NF Lahens, A Mrčela, GR Grant - Nature Reviews Genetics, 2024 - nature.com
Technological advances enabling massively parallel measurement of biological features—
such as microarrays, high-throughput sequencing and mass spectrometry—have ushered in …
such as microarrays, high-throughput sequencing and mass spectrometry—have ushered in …
Plasma proteomic profiles predict future dementia in healthy adults
Y Guo, J You, Y Zhang, WS Liu, YY Huang, YR Zhang… - Nature Aging, 2024 - nature.com
The advent of proteomics offers an unprecedented opportunity to predict dementia onset.
We examined this in data from 52,645 adults without dementia in the UK Biobank, with 1,417 …
We examined this in data from 52,645 adults without dementia in the UK Biobank, with 1,417 …
Defining dysbiosis for a cluster of chronic diseases
The prevalence of many chronic diseases has increased over the last decades. It has been
postulated that dysbiosis driven by environmental factors such as antibiotic use is shifting …
postulated that dysbiosis driven by environmental factors such as antibiotic use is shifting …
miEAA 2.0: integrating multi-species microRNA enrichment analysis and workflow management systems
F Kern, T Fehlmann, J Solomon, L Schwed… - Nucleic acids …, 2020 - academic.oup.com
Gene set enrichment analysis has become one of the most frequently used applications in
molecular biology research. Originally developed for gene sets, the same statistical …
molecular biology research. Originally developed for gene sets, the same statistical …
Brassica carinata genome characterization clarifies U's triangle model of evolution and polyploidy in Brassica
X Song, Y Wei, D Xiao, K Gong, P Sun, Y Ren… - Plant …, 2021 - academic.oup.com
Ethiopian mustard (Brassica carinata) in the Brassicaceae family possesses many excellent
agronomic traits. Here, the high-quality genome sequence of B. carinata is reported …
agronomic traits. Here, the high-quality genome sequence of B. carinata is reported …
MultipleTesting. com: A tool for life science researchers for multiple hypothesis testing correction
O Menyhart, B Weltz, B Győrffy - PloS one, 2021 - journals.plos.org
Scientists from nearly all disciplines face the problem of simultaneously evaluating many
hypotheses. Conducting multiple comparisons increases the likelihood that a non-negligible …
hypotheses. Conducting multiple comparisons increases the likelihood that a non-negligible …
Essential guidelines for computational method benchmarking
In computational biology and other sciences, researchers are frequently faced with a choice
between several computational methods for performing data analyses. Benchmarking …
between several computational methods for performing data analyses. Benchmarking …
An atlas of genetic correlations and genetically informed associations linking psychiatric and immune-related phenotypes
Importance Certain psychiatric and immune-related disorders are reciprocal risk factors.
However, the nature of these associations is unclear. Objective To characterize the …
However, the nature of these associations is unclear. Objective To characterize the …
Toward a gold standard for benchmarking gene set enrichment analysis
L Geistlinger, G Csaba, M Santarelli… - Briefings in …, 2021 - academic.oup.com
Motivation Although gene set enrichment analysis has become an integral part of high-
throughput gene expression data analysis, the assessment of enrichment methods remains …
throughput gene expression data analysis, the assessment of enrichment methods remains …