fastsimcoal2: demographic inference under complex evolutionary scenarios

L Excoffier, N Marchi, DA Marques… - …, 2021 - academic.oup.com
Motivation fastsimcoal2 extends fastsimcoal, a continuous time coalescent-based genetic
simulation program, by enabling the estimation of demographic parameters under very …

Linking human impacts to community processes in terrestrial and freshwater ecosystems

IR McFadden, A Sendek, M Brosse, PM Bach… - Ecology …, 2023 - Wiley Online Library
Human impacts such as habitat loss, climate change and biological invasions are radically
altering biodiversity, with greater effects projected into the future. Evidence suggests human …

Phylogenomics and species delimitation of the economically important Black Basses (Micropterus)

D Kim, AT Taylor, TJ Near - Scientific Reports, 2022 - nature.com
Informed management and conservation efforts are vital to sustainable recreational fishing
and biodiversity conservation. Because the taxonomic rank of species is important in …

Investigating diadromy in fishes and its loss in an-omics era

ML Delgado, DE Ruzzante - Iscience, 2020 - cell.com
Diadromy, the predictable movements of individuals between marine and freshwater
environments, is biogeographically and phylogenetically widespread across fishes. Thus …

Understanding natural selection and similarity: Convergent, parallel and repeated evolution

J Cerca - Molecular Ecology, 2023 - Wiley Online Library
Parallel and convergent evolution offer some of the most compelling evidence for the
significance of natural selection in evolution, as the emergence of similar adaptive solutions …

Ancient horse genomes reveal the timing and extent of dispersals across the Bering Land Bridge

AO Vershinina, PD Heintzman, DG Froese… - Molecular …, 2021 - Wiley Online Library
Abstract The Bering Land Bridge (BLB) last connected Eurasia and North America during
the Late Pleistocene. Although the BLB would have enabled transfers of terrestrial biota in …

Population structure limits parallel evolution in sticklebacks

B Fang, P Kemppainen, P Momigliano… - Molecular Biology and …, 2021 - academic.oup.com
Population genetic theory predicts that small effective population sizes (N e) and restricted
gene flow limit the potential for local adaptation. In particular, the probability of evolving …

Genome-wide patterns of divergence and introgression after secondary contact between Pungitius sticklebacks

YY Yamasaki, R Kakioka… - … of the Royal …, 2020 - royalsocietypublishing.org
Speciation is a continuous process. Although it is known that differential adaptation can
initiate divergence even in the face of gene flow, we know relatively little about the …

MHC class II genes mediate susceptibility and resistance to coronavirus infections in bats

DW Schmid, M Meyer, K Wilhelm, T Tilley… - Molecular …, 2023 - Wiley Online Library
Understanding the immunogenetic basis of coronavirus (CoV) susceptibility in major
pathogen reservoirs, such as bats, is central to inferring their zoonotic potential. Members of …

Genomic evidence for West Antarctic ice sheet collapse during the Last Interglacial

SCY Lau, NG Wilson, NR Golledge, TR Naish… - Science, 2023 - science.org
The marine-based West Antarctic Ice Sheet (WAIS) is considered vulnerable to irreversible
collapse under future climate trajectories, and its tipping point may lie within the mitigated …