Aptamer–protein interactions: from regulation to biomolecular detection

C Ji, J Wei, L Zhang, X Hou, J Tan, Q Yuan… - Chemical …, 2023 - ACS Publications
Serving as the basis of cell life, interactions between nucleic acids and proteins play
essential roles in fundamental cellular processes. Aptamers are unique single-stranded …

A consensus platform for antibody characterization

R Ayoubi, J Ryan, S Gonzalez Bolivar, C Alende… - Nature protocols, 2024 - nature.com
Antibody-based research applications are critical for biological discovery. Yet there are no
industry standards for comparing the performance of antibodies in various applications. We …

SCoPE-MS: mass spectrometry of single mammalian cells quantifies proteome heterogeneity during cell differentiation

B Budnik, E Levy, G Harmange, N Slavov - Genome biology, 2018 - Springer
Some exciting biological questions require quantifying thousands of proteins in single cells.
To achieve this goal, we develop Single Cell ProtEomics by Mass Spectrometry (SCoPE …

A proposal for validation of antibodies

M Uhlen, A Bandrowski, S Carr, A Edwards… - Nature …, 2016 - nature.com
We convened an ad hoc International Working Group for Antibody Validation in order to
formulate the best approaches for validating antibodies used in common research …

Single-cell analysis tools for drug discovery and development

JR Heath, A Ribas, PS Mischel - Nature reviews Drug discovery, 2016 - nature.com
The genetic, functional or compositional heterogeneity of healthy and diseased tissues
presents major challenges in drug discovery and development. Such heterogeneity hinders …

Single-cell analysis targeting the proteome

M Labib, SO Kelley - Nature Reviews Chemistry, 2020 - nature.com
The existence of cellular heterogeneity and its central relevance to biological phenomena
provides a strong rationale for a need for analytical methods that enable analysis at the …

Scaling of an antibody validation procedure enables quantification of antibody performance in major research applications

R Ayoubi, J Ryan, MS Biddle, W Alshafie, M Fotouhi… - Elife, 2023 - elifesciences.org
Antibodies are critical reagents to detect and characterize proteins. It is commonly
understood that many commercial antibodies do not recognize their intended targets, but …

Rapid immunoprecipitation mass spectrometry of endogenous proteins (RIME) for analysis of chromatin complexes

H Mohammed, C Taylor, GD Brown, EK Papachristou… - Nature protocols, 2016 - nature.com
Rapid immunoprecipitation mass spectrometry of endogenous protein (RIME) is a method
that allows the study of protein complexes, in particular chromatin and transcription factor …

Functions of the sirtuin deacylase SIRT5 in normal physiology and pathobiology

S Kumar, DB Lombard - Critical reviews in biochemistry and …, 2018 - Taylor & Francis
Sirtuins are NAD+-dependent protein deacylases/ADP-ribosyltransferases that have
emerged as candidate targets for new therapeutics to treat metabolic disorders and other …

Nanobodies: site-specific labeling for super-resolution imaging, rapid epitope-mapping and native protein complex isolation

T Pleiner, M Bates, S Trakhanov, CT Lee, JE Schliep… - elife, 2015 - elifesciences.org
Nanobodies are single-domain antibodies of camelid origin. We generated nanobodies
against the vertebrate nuclear pore complex (NPC) and used them in STORM imaging to …