A model industrial workhorse: Bacillus subtilis strain 168 and its genome after a quarter of a century

E Bremer, A Calteau, A Danchin… - Microbial …, 2023 - Wiley Online Library
The vast majority of genomic sequences are automatically annotated using various software
programs. The accuracy of these annotations depends heavily on the very few manual …

[HTML][HTML] mRNA vaccines: Why is the biology of retroposition ignored?

T Domazet-Lošo - Genes, 2022 - mdpi.com
The major advantage of mRNA vaccines over more conventional approaches is their
potential for rapid development and large-scale deployment in pandemic situations. In the …

New genes interacted with recent whole-genome duplicates in the fast stem growth of bamboos

G Jin, PF Ma, X Wu, L Gu, M Long… - Molecular biology and …, 2021 - academic.oup.com
As drivers of evolutionary innovations, new genes allow organisms to explore new niches.
However, clear examples of this process remain scarce. Bamboos, the unique grass lineage …

[HTML][HTML] Macroevolutionary dynamics of gene family gain and loss along multicellular eukaryotic lineages

M Domazet-Lošo, T Široki, K Šimičević… - Nature …, 2024 - nature.com
The gain and loss of genes fluctuate over evolutionary time in major eukaryotic clades.
However, the full profile of these macroevolutionary trajectories is still missing. To give a …

Response characteristics of indigenous microbial community in polycyclic aromatic hydrocarbons (PAHs) contaminated aquifers under polyethylene microplastics …

Y Ding, J Wang, Y Zhang, Y Zhang, W Xu… - Science of The Total …, 2023 - Elsevier
To understand the response characteristics of indigenous microbial community in PAH-
contaminated aquifers to the coexistence of microplastics. In this paper, we constructed a …

Embryo-Like Features in Developing Bacillus subtilis Biofilms

M Futo, L Opašić, S Koska, N Čorak… - Molecular biology …, 2021 - academic.oup.com
Correspondence between evolution and development has been discussed for more than
two centuries. Recent work reveals that phylogeny− ontogeny correlations are indeed …

Taxonomically Restricted Genes in Bacillus may Form Clusters of Homologs and Can be Traced to a Large Reservoir of Noncoding Sequences

WM Karlowski, D Varshney… - Genome Biology and …, 2023 - academic.oup.com
Taxonomically restricted genes (TRGs) are unique for a defined group of organisms and
may act as potential genetic determinants of lineage-specific, biological properties. Here, we …

[HTML][HTML] Co-culturing Bacillus subtilis and wastewater microbial community in a bio-electrochemical system enhances denitrification and butyrate formation

S Rahimi, O Modin, F Roshanzamir, A Neissi… - Chemical Engineering …, 2020 - Elsevier
Bio-augmentation could be a promising strategy to improve processes for treatment and
resource recovery from wastewater. In this study, the Gram-positive bacterium Bacillus …

[HTML][HTML] Comparative genomics analysis of two banana Fusarium wilt biocontrol endophytes Bacillus subtilis R31 and TR21 provides insights into their differences on …

C Li, P Cheng, L Zheng, Y Li, Y Chen, S Wen, G Yu - Genomics, 2021 - Elsevier
Fusarium wilt of banana is considered one of the most destructive plant diseases. Bacillus
subtilis R31 and TR21, isolated from Dendrobium sp. leaves, exhibit different …

No Endospore Formation Confirmed in Members of the Phylum Proteobacteria

P Beskrovnaya, D Fakih, I Morneau… - Applied and …, 2021 - Am Soc Microbiol
Endospore formation is used by members of the phylum Firmicutes to withstand extreme
environmental conditions. Several recent studies have proposed endospore formation in …