The role of metagenomics and next-generation sequencing in infectious disease diagnosis
S Miller, C Chiu - Clinical chemistry, 2022 - academic.oup.com
Background Metagenomic next-generation sequencing (mNGS) for pathogen detection is
becoming increasingly available as a method to identify pathogens in cases of suspected …
becoming increasingly available as a method to identify pathogens in cases of suspected …
[HTML][HTML] Metagenomics next-generation sequencing tests take the stage in the diagnosis of lower respiratory tract infections
Z Diao, D Han, R Zhang, J Li - Journal of advanced research, 2022 - Elsevier
Background Metagenomic next-generation sequencing (mNGS) has changed the diagnosis
landscape of lower respiratory tract infections (LRIs). With the development of newer …
landscape of lower respiratory tract infections (LRIs). With the development of newer …
Agnostic sequencing for detection of viral pathogens
NPG Gauthier, SD Chorlton, M Krajden… - Clinical microbiology …, 2023 - Am Soc Microbiol
The advent of next-generation sequencing (NGS) technologies has expanded our ability to
detect and analyze microbial genomes and has yielded novel molecular approaches for …
detect and analyze microbial genomes and has yielded novel molecular approaches for …
[HTML][HTML] Recommendations for the introduction of metagenomic next-generation sequencing in clinical virology, part II: bioinformatic analysis and reporting
Metagenomic next-generation sequencing (mNGS) is an untargeted technique for
determination of microbial DNA/RNA sequences in a variety of sample types from patients …
determination of microbial DNA/RNA sequences in a variety of sample types from patients …
A case for investment in clinical metagenomics in low-income and middle-income countries
Clinical metagenomics is the diagnostic approach with the broadest capacity to detect both
known and novel pathogens. Clinical metagenomics is costly to run and requires …
known and novel pathogens. Clinical metagenomics is costly to run and requires …
[HTML][HTML] Benchmark of thirteen bioinformatic pipelines for metagenomic virus diagnostics using datasets from clinical samples
Introduction Metagenomic sequencing is increasingly being used in clinical settings for
difficult to diagnose cases. The performance of viral metagenomic protocols relies to a large …
difficult to diagnose cases. The performance of viral metagenomic protocols relies to a large …
Clinical metagenomics—challenges and future prospects
M Batool, J Galloway-Peña - Frontiers in Microbiology, 2023 - frontiersin.org
Infections lacking precise diagnosis are often caused by a rare or uncharacterized
pathogen, a combination of pathogens, or a known pathogen carrying undocumented or …
pathogen, a combination of pathogens, or a known pathogen carrying undocumented or …
The potential role of clinical metagenomics in infectious diseases: therapeutic perspectives
Clinical metagenomics (CMg) is the process of sequencing nucleic acid of clinical samples
to obtain clinically relevant information such as the identification of microorganisms and their …
to obtain clinically relevant information such as the identification of microorganisms and their …
Virion-associated nucleic acid-based metagenomics: a decade of advances in molecular characterization of plant viruses
O Moubset, S François, F Maclot, E Palanga… - …, 2022 - Am Phytopath Society
Over the last decade, viral metagenomic studies have resulted in the discovery of thousands
of previously unknown viruses. These studies are likely to play a pivotal role in obtaining an …
of previously unknown viruses. These studies are likely to play a pivotal role in obtaining an …
Unified metagenomic method for rapid detection of microorganisms in clinical samples
A Alcolea-Medina, C Alder, LB Snell… - Communications …, 2024 - nature.com
Background Clinical metagenomics involves the genomic sequencing of all microorganisms
in clinical samples ideally after depletion of human DNA to increase sensitivity and reduce …
in clinical samples ideally after depletion of human DNA to increase sensitivity and reduce …