Peptide design principles for antimicrobial applications

MDT Torres, S Sothiselvam, TK Lu… - Journal of molecular …, 2019 - Elsevier
The increased incidence of bacterial resistance to available antibiotics represents a major
global health problem and highlights the need for novel anti-infective therapies …

An engineered T7 RNA polymerase that produces mRNA free of immunostimulatory byproducts

A Dousis, K Ravichandran, EM Hobert, MJ Moore… - Nature …, 2023 - nature.com
In vitro transcription (IVT) is a DNA-templated process for synthesizing long RNA transcripts,
including messenger RNA (mRNA). For many research and commercial applications, IVT of …

ff19SB: amino-acid-specific protein backbone parameters trained against quantum mechanics energy surfaces in solution

C Tian, K Kasavajhala, KAA Belfon… - Journal of chemical …, 2019 - ACS Publications
Molecular dynamics (MD) simulations have become increasingly popular in studying the
motions and functions of biomolecules. The accuracy of the simulation, however, is highly …

Discovery of Sulanemadlin (ALRN-6924), the first cell-permeating, stabilized α-helical peptide in clinical development

V Guerlavais, TK Sawyer, L Carvajal… - Journal of Medicinal …, 2023 - ACS Publications
We report the discovery of sulanemadlin (ALRN-6924), the first cell-permeating, stabilized α-
helical peptide to enter clinical trials. ALRN-6924 is a “stapled peptide” that mimics the N …

Using deep learning to annotate the protein universe

ML Bileschi, D Belanger, DH Bryant, T Sanderson… - Nature …, 2022 - nature.com
Understanding the relationship between amino acid sequence and protein function is a long-
standing challenge with far-reaching scientific and translational implications. State-of-the-art …

Antimicrobial peptides

AA Bahar, D Ren - Pharmaceuticals, 2013 - mdpi.com
The rapid increase in drug-resistant infections has presented a serious challenge to
antimicrobial therapies. The failure of the most potent antibiotics to kill “superbugs” …

Conserved class B GPCR activation by a biased intracellular agonist

LH Zhao, Q He, Q Yuan, Y Gu, X He, H Shan, J Li… - Nature, 2023 - nature.com
Class B G-protein-coupled receptors (GPCRs), including glucagon-like peptide 1 receptor
(GLP1R) and parathyroid hormone 1 receptor (PTH1R), are important drug targets …

Cyclin D-Cdk4, 6 drives cell-cycle progression via the retinoblastoma protein's C-terminal helix

BR Topacio, E Zatulovskiy, S Cristea, S Xie, CS Tambo… - Molecular cell, 2019 - cell.com
The cyclin-dependent kinases Cdk4 and Cdk6 form complexes with D-type cyclins to drive
cell proliferation. A well-known target of cyclin D-Cdk4, 6 is the retinoblastoma protein Rb …

[HTML][HTML] Directed mutational scanning reveals a balance between acidic and hydrophobic residues in strong human activation domains

MV Staller, E Ramirez, SR Kotha, AS Holehouse… - Cell systems, 2022 - cell.com
Acidic activation domains are intrinsically disordered regions of the transcription factors that
bind coactivators. The intrinsic disorder and low evolutionary conservation of activation …

[HTML][HTML] Quantitative analysis of HSP90-client interactions reveals principles of substrate recognition

M Taipale, I Krykbaeva, M Koeva, C Kayatekin… - Cell, 2012 - cell.com
HSP90 is a molecular chaperone that associates with numerous substrate proteins called
clients. It plays many important roles in human biology and medicine, but determinants of …