Commonalities and differences in the mutational signature and somatic driver mutation landscape across solid and hollow viscus organs

AS Ng, DKH Chan - Oncogene, 2023 - nature.com
Advances in sequencing have revealed a highly variegated landscape of mutational
signatures and somatic driver mutations in a range of normal tissues. Normal tissues …

Applications of advanced technologies for detecting genomic structural variation

V Laufer, TW Glover, TE Wilson - Mutation Research/Reviews in Mutation …, 2023 - Elsevier
Chromosomal structural variation (SV) encompasses a heterogenous class of genetic
variants that exerts strong influences on human health and disease. Despite their …

Germline de novo mutations in families with Mendelian cancer syndromes caused by defects in DNA repair

K Sherwood, JC Ward, I Soriano, L Martin… - nature …, 2023 - nature.com
DNA repair defects underlie many cancer syndromes. We tested whether de novo germline
mutations (DNMs) are increased in families with germline defects in polymerase …

[HTML][HTML] A pan-cancer landscape of pathogenic somatic copy number variations

T Becchi, L Beltrame, L Mannarino, E Calura… - Journal of Biomedical …, 2023 - Elsevier
Abstract Objective Copy number variations (CNVs) play crucial roles in physiological and
pathological processes, including cancer. However, the functional implications of somatic …

Chromosome instability region analysis and identification of the driver genes of the epithelial ovarian cancer cell lines A2780 and SKOV3

J Li, Z Chen, W Xiao, H Liang, Y Liu… - Journal of Cellular …, 2023 - Wiley Online Library
Epithelial ovarian cancer (EOC) is one of the most prevalent gynaecological cancers
worldwide. The molecular mechanisms of serous ovarian cancer (SOC) remain unclear and …

Concomitant selenoenzyme inhibitor exposures as etiologic contributors to disease: Implications for preventative medicine

NVC Ralston - Archives of Biochemistry and Biophysics, 2023 - Elsevier
The physiological activities of selenium (Se) occur through enzymes that incorporate
selenocysteine (Sec), a rare but important amino acid. The human genome includes 25 …

Recent Advances in Pathology: the 2022 Annual Review Issue of The Journal of Pathology

CS Herrington, R Poulsom, N Pillay… - The Journal of …, 2022 - Wiley Online Library
Abstract The 2022 Annual Review Issue of The Journal of Pathology, Recent Advances in
Pathology, contains 15 invited reviews on research areas of growing importance in …

Determinants of tumor immune evasion: the role of T cell exposed motif frequency and mutant amino acid exposure

EJ Homan, RD Bremel - Frontiers in Immunology, 2023 - frontiersin.org
Few neoepitopes detected in tumor biopsies are immunogenic. Tumor-specific T cell
responses require both the presentation of an epitope that differs from wildtype and the …

Mutations, substitutions, and selection: Linking mutagenic processes to cancer using evolutionary theory

VL Cannataro, KA Glasmacher, CE Hampson - Biochimica et Biophysica …, 2024 - Elsevier
Cancers are the product of evolutionary events, where molecular variation occurs and
accumulates in tissues and tumors. Sequencing of this molecular variation informs not only …

[HTML][HTML] Biochemical analysis of H2O2-induced mutation spectra revealed that multiple damages were involved in the mutational process

T Sugiyama, MR Sanyal - DNA repair, 2024 - Elsevier
Reactive oxygen species (ROS) are a major threat to genomic integrity and believed to be
one of the etiologies of cancers. Here we developed a cell-free system to analyze ROS …