Impact of transposable elements on polyploid plant genomes
CM Vicient, JM Casacuberta - Annals of Botany, 2017 - academic.oup.com
Background The growing wealth of knowledge on whole-plant genome sequences is
highlighting the key role of transposable elements (TEs) in plant evolution, as a driver of …
highlighting the key role of transposable elements (TEs) in plant evolution, as a driver of …
Retrotransposons in plant genomes: structure, identification, and classification through bioinformatics and machine learning
Transposable elements (TEs) are genomic units able to move within the genome of virtually
all organisms. Due to their natural repetitive numbers and their high structural diversity, the …
all organisms. Due to their natural repetitive numbers and their high structural diversity, the …
Whole-genome sequencing of cultivated and wild peppers provides insights into Capsicum domestication and specialization
C Qin, C Yu, Y Shen, X Fang, L Chen… - Proceedings of the …, 2014 - National Acad Sciences
As an economic crop, pepper satisfies people's spicy taste and has medicinal uses
worldwide. To gain a better understanding of Capsicum evolution, domestication, and …
worldwide. To gain a better understanding of Capsicum evolution, domestication, and …
Genetic diversity, population structure, and relationships in a collection of pepper (Capsicum spp.) landraces from the Spanish centre of diversity revealed by …
Pepper (Capsicum spp.) is one of the most important vegetable crops; however, pepper
genomic studies lag behind those of other important Solanaceae. Here we present the …
genomic studies lag behind those of other important Solanaceae. Here we present the …
Genome-wide SNP discovery and population structure analysis in pepper (Capsicum annuum) using genotyping by sequencing
Background Knowledge on population structure and genetic diversity in vegetable crops is
essential for association mapping studies and genomic selection. Genotyping by …
essential for association mapping studies and genomic selection. Genotyping by …
RNA-seq pinpoints a Xanthomonas TAL-effector activated resistance gene in a large-crop genome
T Strauß, RMP Van Poecke, A Strauß… - Proceedings of the …, 2012 - National Acad Sciences
Transcription activator-like effector (TALE) proteins of the plant pathogenic bacterial genus
Xanthomonas bind to and transcriptionally activate host susceptibility genes, promoting …
Xanthomonas bind to and transcriptionally activate host susceptibility genes, promoting …
Integrated annotations and analyses of small RNA–producing loci from 47 diverse plants
A Lunardon, NR Johnson, E Hagerott, T Phifer… - Genome …, 2020 - genome.cshlp.org
Plant endogenous small RNAs (sRNAs) are important regulators of gene expression. There
are two broad categories of plant sRNAs: microRNAs (miRNAs) and endogenous short …
are two broad categories of plant sRNAs: microRNAs (miRNAs) and endogenous short …
Chromosome evolution in connection with repetitive sequences and epigenetics in plants
SF Li, T Su, GQ Cheng, BX Wang, X Li, CL Deng… - Genes, 2017 - mdpi.com
Chromosome evolution is a fundamental aspect of evolutionary biology. The evolution of
chromosome size, structure and shape, number, and the change in DNA composition …
chromosome size, structure and shape, number, and the change in DNA composition …
Phylogenetic trends and environmental correlates of nuclear genome size variation in Helianthus sunflowers
F Qiu, EJ Baack, KD Whitney, DG Bock… - New …, 2019 - Wiley Online Library
Flowering plants serve as a powerful model for studying the evolution of nuclear genome
size (GS) given the tremendous GS variation that exists both within and across angiosperm …
size (GS) given the tremendous GS variation that exists both within and across angiosperm …
Factors influencing gene family size variation among related species in a plant family, Solanaceae
Gene duplication and loss contribute to gene content differences as well as phenotypic
divergence across species. However, the extent to which gene content varies among closely …
divergence across species. However, the extent to which gene content varies among closely …