Impact of transposable elements on polyploid plant genomes

CM Vicient, JM Casacuberta - Annals of Botany, 2017 - academic.oup.com
Background The growing wealth of knowledge on whole-plant genome sequences is
highlighting the key role of transposable elements (TEs) in plant evolution, as a driver of …

Retrotransposons in plant genomes: structure, identification, and classification through bioinformatics and machine learning

S Orozco-Arias, G Isaza, R Guyot - International journal of molecular …, 2019 - mdpi.com
Transposable elements (TEs) are genomic units able to move within the genome of virtually
all organisms. Due to their natural repetitive numbers and their high structural diversity, the …

Whole-genome sequencing of cultivated and wild peppers provides insights into Capsicum domestication and specialization

C Qin, C Yu, Y Shen, X Fang, L Chen… - Proceedings of the …, 2014 - National Acad Sciences
As an economic crop, pepper satisfies people's spicy taste and has medicinal uses
worldwide. To gain a better understanding of Capsicum evolution, domestication, and …

Genetic diversity, population structure, and relationships in a collection of pepper (Capsicum spp.) landraces from the Spanish centre of diversity revealed by …

L Pereira-Dias, S Vilanova, A Fita, J Prohens… - Horticulture …, 2019 - academic.oup.com
Pepper (Capsicum spp.) is one of the most important vegetable crops; however, pepper
genomic studies lag behind those of other important Solanaceae. Here we present the …

Genome-wide SNP discovery and population structure analysis in pepper (Capsicum annuum) using genotyping by sequencing

F Taranto, N D'Agostino, B Greco, T Cardi, P Tripodi - BMC genomics, 2016 - Springer
Background Knowledge on population structure and genetic diversity in vegetable crops is
essential for association mapping studies and genomic selection. Genotyping by …

RNA-seq pinpoints a Xanthomonas TAL-effector activated resistance gene in a large-crop genome

T Strauß, RMP Van Poecke, A Strauß… - Proceedings of the …, 2012 - National Acad Sciences
Transcription activator-like effector (TALE) proteins of the plant pathogenic bacterial genus
Xanthomonas bind to and transcriptionally activate host susceptibility genes, promoting …

Integrated annotations and analyses of small RNA–producing loci from 47 diverse plants

A Lunardon, NR Johnson, E Hagerott, T Phifer… - Genome …, 2020 - genome.cshlp.org
Plant endogenous small RNAs (sRNAs) are important regulators of gene expression. There
are two broad categories of plant sRNAs: microRNAs (miRNAs) and endogenous short …

Chromosome evolution in connection with repetitive sequences and epigenetics in plants

SF Li, T Su, GQ Cheng, BX Wang, X Li, CL Deng… - Genes, 2017 - mdpi.com
Chromosome evolution is a fundamental aspect of evolutionary biology. The evolution of
chromosome size, structure and shape, number, and the change in DNA composition …

Phylogenetic trends and environmental correlates of nuclear genome size variation in Helianthus sunflowers

F Qiu, EJ Baack, KD Whitney, DG Bock… - New …, 2019 - Wiley Online Library
Flowering plants serve as a powerful model for studying the evolution of nuclear genome
size (GS) given the tremendous GS variation that exists both within and across angiosperm …

Factors influencing gene family size variation among related species in a plant family, Solanaceae

P Wang, BM Moore, NL Panchy, F Meng… - Genome biology and …, 2018 - academic.oup.com
Gene duplication and loss contribute to gene content differences as well as phenotypic
divergence across species. However, the extent to which gene content varies among closely …