DoriC 5.0: an updated database of oriC regions in both bacterial and archaeal genomes
Replication of chromosomes is one of the central events in the cell cycle. Chromosome
replication begins at specific sites, called origins of replication (oriCs), for all three domains …
replication begins at specific sites, called origins of replication (oriCs), for all three domains …
Codon Deviation Coefficient: a novel measure for estimating codon usage bias and its statistical significance
Background Genetic mutation, selective pressure for translational efficiency and accuracy,
level of gene expression, and protein function through natural selection are all believed to …
level of gene expression, and protein function through natural selection are all believed to …
Extreme Features of the Galdieria sulphuraria Organellar Genomes: A Consequence of Polyextremophily?
Nuclear genome sequencing from extremophilic eukaryotes has revealed clues about the
mechanisms of adaptation to extreme environments, but the functional consequences of …
mechanisms of adaptation to extreme environments, but the functional consequences of …
Recent advances in the identification of replication origins based on the Z-curve method
F Gao - Current Genomics, 2014 - ingentaconnect.com
Precise DNA replication is critical for the maintenance of genetic integrity in all organisms. In
all three domains of life, DNA replication starts at a specialized locus, termed as the …
all three domains of life, DNA replication starts at a specialized locus, termed as the …
The percentage of bacterial genes on leading versus lagging strands is influenced by multiple balancing forces
The majority of bacterial genes are located on the leading strand, and the percentage of
such genes has a large variation across different bacteria. Although some explanations …
such genes has a large variation across different bacteria. Although some explanations …
Quantitative analysis of correlation between AT and GC biases among bacterial genomes
G Zhang, F Gao - PLoS One, 2017 - journals.plos.org
Due to different replication mechanisms between the leading and lagging strands,
nucleotide composition asymmetries widely exist in bacterial genomes. A general …
nucleotide composition asymmetries widely exist in bacterial genomes. A general …
The influence of the selection at the amino acid level on synonymous codon usage from the viewpoint of alternative genetic codes
Synonymous codon usage can be influenced by mutations and/or selection, eg, for speed of
protein translation and correct folding. However, this codon bias can also be affected by a …
protein translation and correct folding. However, this codon bias can also be affected by a …
Association of purine asymmetry, strand-biased gene distribution and PolC within Firmicutes and beyond: a new appraisal
Abstract Background The Firmicutes often possess three conspicuous genome features:
marked Purine Asymmetry (PAS) across two strands of replication, Strand-biased Gene …
marked Purine Asymmetry (PAS) across two strands of replication, Strand-biased Gene …
De Novo Assembly and Cluster Analysis of Siberian Larch Transcriptome and Genome
M Sadovsky, Y Putintseva, V Birukov… - … , IWBBIO 2016, Granada …, 2016 - Springer
Abstract We studied Siberian Larch (Larix Sibirica) transcriptome making de novo assembly
and cluster analysis of contigs frequency dictionaries. Also, some preliminary results of …
and cluster analysis of contigs frequency dictionaries. Also, some preliminary results of …
Strand-biased gene distribution in bacteria is related to both horizontal gene transfer and strand-biased nucleotide composition
Although strand-biased gene distribution (SGD) was described some two decades ago, the
underlying molecular mechanisms and their relationship remain elusive. Its facets include …
underlying molecular mechanisms and their relationship remain elusive. Its facets include …