Interpreting whole genome sequencing for investigating tuberculosis transmission: a systematic review
Background Whole genome sequencing (WGS) is becoming an important part of
epidemiological investigations of infectious diseases due to greater resolution and cost …
epidemiological investigations of infectious diseases due to greater resolution and cost …
Regulatory variants: from detection to predicting impact
E Rojano, P Seoane, JAG Ranea… - Briefings in …, 2019 - academic.oup.com
Variants within non-coding genomic regions can greatly affect disease. In recent years,
increasing focus has been given to these variants, and how they can alter regulatory …
increasing focus has been given to these variants, and how they can alter regulatory …
Scaling accurate genetic variant discovery to tens of thousands of samples
R Poplin, V Ruano-Rubio, MA DePristo, TJ Fennell… - BioRxiv, 2017 - biorxiv.org
Comprehensive disease gene discovery in both common and rare diseases will require the
efficient and accurate detection of all classes of genetic variation across tens to hundreds of …
efficient and accurate detection of all classes of genetic variation across tens to hundreds of …
A reference data set of 5.4 million phased human variants validated by genetic inheritance from sequencing a three-generation 17-member pedigree
Improvement of variant calling in next-generation sequence data requires a comprehensive,
genome-wide catalog of high-confidence variants called in a set of genomes for use as a …
genome-wide catalog of high-confidence variants called in a set of genomes for use as a …
Systematic comparison of variant calling pipelines using gold standard personal exome variants
The success of clinical genomics using next generation sequencing (NGS) requires the
accurate and consistent identification of personal genome variants. Assorted variant calling …
accurate and consistent identification of personal genome variants. Assorted variant calling …
Systematic comparison of germline variant calling pipelines cross multiple next-generation sequencers
J Chen, X Li, H Zhong, Y Meng, H Du - Scientific reports, 2019 - nature.com
The development and innovation of next generation sequencing (NGS) and the subsequent
analysis tools have gain popularity in scientific researches and clinical diagnostic …
analysis tools have gain popularity in scientific researches and clinical diagnostic …
The evaluation of Bcftools mpileup and GATK HaplotypeCaller for variant calling in non-human species
M Lefouili, K Nam - Scientific reports, 2022 - nature.com
Identification of genetic variations is a central part of population and quantitative genomics
studies based on high-throughput sequencing data. Even though popular variant callers …
studies based on high-throughput sequencing data. Even though popular variant callers …
Genetic variation in the human cytochrome P450 supergene family
K Fujikura, M Ingelman-Sundberg… - Pharmacogenetics and …, 2015 - journals.lww.com
Objectives Single nucleotide variations (SNVs) in the cytochrome P450 (CYP) gene family
are a primary cause of interindividual differences in therapeutic effects and adverse …
are a primary cause of interindividual differences in therapeutic effects and adverse …
Comparison of GATK and DeepVariant by trio sequencing
While next-generation sequencing (NGS) has transformed genetic testing, it generates large
quantities of noisy data that require a significant amount of bioinformatics to generate useful …
quantities of noisy data that require a significant amount of bioinformatics to generate useful …
[HTML][HTML] From next-generation resequencing reads to a high-quality variant data set
SP Pfeifer - Heredity, 2017 - nature.com
Sequencing has revolutionized biology by permitting the analysis of genomic variation at an
unprecedented resolution. High-throughput sequencing is fast and inexpensive, making it …
unprecedented resolution. High-throughput sequencing is fast and inexpensive, making it …