Bottom-up coarse-graining: Principles and perspectives
Large-scale computational molecular models provide scientists a means to investigate the
effect of microscopic details on emergent mesoscopic behavior. Elucidating the relationship …
effect of microscopic details on emergent mesoscopic behavior. Elucidating the relationship …
Perspective: Advances, challenges, and insight for predictive coarse-grained models
WG Noid - The Journal of Physical Chemistry B, 2023 - ACS Publications
By averaging over atomic details, coarse-grained (CG) models provide profound
computational and conceptual advantages for studying soft materials. In particular, bottom …
computational and conceptual advantages for studying soft materials. In particular, bottom …
A review of advancements in coarse-grained molecular dynamics simulations
SY Joshi, SA Deshmukh - Molecular Simulation, 2021 - Taylor & Francis
Over the last few years, coarse-grained molecular dynamics has emerged as a way to model
large and complex systems in an efficient and inexpensive manner due to its lowered …
large and complex systems in an efficient and inexpensive manner due to its lowered …
Chemically specific coarse‐graining of polymers: Methods and prospects
S Dhamankar, MA Webb - Journal of Polymer Science, 2021 - Wiley Online Library
Coarse‐grained (CG) modeling is an invaluable tool for the study of polymers and other soft
matter systems due to the span of spatiotemporal scales that typify their physics and …
matter systems due to the span of spatiotemporal scales that typify their physics and …
Perspective: Coarse-grained models for biomolecular systems
WG Noid - The Journal of chemical physics, 2013 - pubs.aip.org
By focusing on essential features, while averaging over less important details, coarse-
grained (CG) models provide significant computational and conceptual advantages with …
grained (CG) models provide significant computational and conceptual advantages with …
Computer simulations of deep eutectic solvents: Challenges, solutions, and perspectives
D Tolmachev, N Lukasheva, R Ramazanov… - International journal of …, 2022 - mdpi.com
Deep eutectic solvents (DESs) are one of the most rapidly evolving types of solvents,
appearing in a broad range of applications, such as nanotechnology, electrochemistry …
appearing in a broad range of applications, such as nanotechnology, electrochemistry …
Coarse-graining auto-encoders for molecular dynamics
W Wang, R Gómez-Bombarelli - npj Computational Materials, 2019 - nature.com
Molecular dynamics simulations provide theoretical insight into the microscopic behavior of
condensed-phase materials and, as a predictive tool, enable computational design of new …
condensed-phase materials and, as a predictive tool, enable computational design of new …
Coarse-graining polymers with the MARTINI force-field: polystyrene as a benchmark case
G Rossi, L Monticelli, SR Puisto, I Vattulainen… - Soft Matter, 2011 - pubs.rsc.org
We hereby introduce a new hybrid thermodynamic-structural approach to the coarse-
graining of polymers. The new model is developed within the framework of the MARTINI …
graining of polymers. The new model is developed within the framework of the MARTINI …
Many-body coarse-grained interactions using Gaussian approximation potentials
We introduce a computational framework that is able to describe general many-body coarse-
grained (CG) interactions of molecules and use it to model the free energy surface of …
grained (CG) interactions of molecules and use it to model the free energy surface of …
[HTML][HTML] On the representability problem and the physical meaning of coarse-grained models
In coarse-grained (CG) models where certain fine-grained (FG, ie, atomistic resolution)
observables are not directly represented, one can nonetheless identify indirect the CG …
observables are not directly represented, one can nonetheless identify indirect the CG …