[HTML][HTML] Insertions and deletions in protein evolution and engineering
S Savino, T Desmet, J Franceus - Biotechnology Advances, 2022 - Elsevier
Protein evolution or engineering studies are traditionally focused on amino acid
substitutions and the way these contribute to fitness. Meanwhile, the insertion and deletion …
substitutions and the way these contribute to fitness. Meanwhile, the insertion and deletion …
Sourcing thermotolerant poly (ethylene terephthalate) hydrolase scaffolds from natural diversity
Enzymatic deconstruction of poly (ethylene terephthalate)(PET) is under intense
investigation, given the ability of hydrolase enzymes to depolymerize PET to its constituent …
investigation, given the ability of hydrolase enzymes to depolymerize PET to its constituent …
Enzyme function and evolution through the lens of bioinformatics
AJM Ribeiro, IG Riziotis, N Borkakoti… - Biochemical …, 2023 - portlandpress.com
Enzymes have been shaped by evolution over billions of years to catalyse the chemical
reactions that support life on earth. Dispersed in the literature, or organised in online …
reactions that support life on earth. Dispersed in the literature, or organised in online …
Microbial diversity declines in warmed tropical soil and respiration rise exceed predictions as communities adapt
Perturbation of soil microbial communities by rising temperatures could have important
consequences for biodiversity and future climate, particularly in tropical forests where high …
consequences for biodiversity and future climate, particularly in tropical forests where high …
FLIP: Benchmark tasks in fitness landscape inference for proteins
Abstract Machine learning could enable an unprecedented level of control in protein
engineering for therapeutic and industrial applications. Critical to its use in designing …
engineering for therapeutic and industrial applications. Critical to its use in designing …
Unlocking the stereoselectivity and substrate acceptance of enzymes: Proline‐induced loop engineering test
G Qu, Y Bi, B Liu, J Li, X Han, W Liu… - Angewandte Chemie …, 2022 - Wiley Online Library
Protein stability and evolvability influence each other. Although protein dynamics play
essential roles in various catalytically important properties, their high flexibility and diversity …
essential roles in various catalytically important properties, their high flexibility and diversity …
Protein conformational ensembles in function: roles and mechanisms
The sequence-structure-function paradigm has dominated twentieth century molecular
biology. The paradigm tacitly stipulated that for each sequence there exists a single, well …
biology. The paradigm tacitly stipulated that for each sequence there exists a single, well …
Ensemble-function relationships to dissect mechanisms of enzyme catalysis
Decades of structure-function studies have established our current extensive understanding
of enzymes. However, traditional structural models are snapshots of broader conformational …
of enzymes. However, traditional structural models are snapshots of broader conformational …
Photosynthetic adaptation to polar life: Energy balance, photoprotection and genetic redundancy
The persistent low temperature that characterize polar habitats combined with the
requirement for light for all photoautotrophs creates a conundrum. The absorption of too …
requirement for light for all photoautotrophs creates a conundrum. The absorption of too …
Dual-function biomimetic carrier based facilitated transport mixed matrix membranes with high stability for efficient CO2/N2 separation
Realizing efficient carbon capture by high-performance CO 2 separation membrane is
significant to mitigate the increasing emissions of greenhouse gas CO 2. Inspired by the …
significant to mitigate the increasing emissions of greenhouse gas CO 2. Inspired by the …