FT-IR spectroscopic analysis of the secondary structures present during the desiccation induced aggregation of elastin-like polypeptide on silica

JS Cobb, V Zai-Rose, JJ Correia, AV Janorkar - ACS omega, 2020 - ACS Publications
Previously, we found that elastin-like polypeptide (ELP), when dried above the lower critical
solution temperature on top of a hydrophilic fused silica disk, exhibited a dynamic …

[HTML][HTML] The Activity of the Durum Wheat (Triticum durum L.) Catalase 1 (TdCAT1) Is Modulated by Calmodulin

M Ghorbel, K Feki, S Tounsi, N Haddaji, M Hanin… - Antioxidants, 2022 - mdpi.com
Plant catalases (CAT) are involved in the cellular scavenging of the reactive oxygen species
during developmental processes and in response to abiotic and biotic stresses. However …

Magnesium and manganese binding sites on proteins have the same predominant motif of secondary structure

VV Khrustalev, EV Barkovsky, TA Khrustaleva - Journal of Theoretical …, 2016 - Elsevier
Abstract Manganese ion (Mn 2+) can substitute magnesium ion (Mg 2+) in active sites of
numerous enzymes. Binding sites for these two ions have been studied in two sets of protein …

Wenxiang 3.0: Evolutionary Visualization of α, π, and 3/10 Helices

JR Jungck, M Cebeci - Evolutionary Bioinformatics, 2022 - journals.sagepub.com
Wenxiang diagrams illustrate protein helices as spirals on a plane and thus have the
advantage over helical wheels of being planar graphs. Wenxiang 3.0 extends the original …

Removal of the side chain at the active-site serine by a glycine substitution increases the stability of a wide range of serine β-lactamases by relieving steric strain

V Stojanoski, CJ Adamski, L Hu, SC Mehta… - Biochemistry, 2016 - ACS Publications
Serine β-lactamases are bacterial enzymes that hydrolyze β-lactam antibiotics. They utilize
an active-site serine residue as a nucleophile, forming an acyl–enzyme intermediate during …

Ethanol binding sites on proteins

VV Khrustalev, TA Khrustaleva, SV Lelevich - Journal of Molecular …, 2017 - Elsevier
This study is on the analysis of ethanol binding sites on 3D structures of nonredundant
proteins from the Protein Data Bank. The only one amino acid residue that is significantly …

Utilizing Electron Spin Echo Envelope Modulation To Distinguish between the Local Secondary Structures of an α-Helix and an Amphipathic 310-Helical Peptide

L Bottorf, S Rafferty, ID Sahu… - The Journal of …, 2017 - ACS Publications
Electron spin echo envelope modulation (ESEEM) spectroscopy was used to distinguish
between the local secondary structures of an α-helix and a 310-helix. Previously, we have …

Dynamics and deformability of α-, 310-and π-helices

TJ Narwani, P Craveur, NK Shinada… - Archives of Biological …, 2018 - serbiosoc.org.rs
Protein structures are often represented as seen in crystals as (i) rigid macromolecules (ii)
with helices, sheets and coils. However, both definitions are partial because (i) proteins are …

Sliding clamp of DNA polymerase III as a drug target for TB therapy: comprehensive conformational and binding analysis from molecular dynamic simulations

KE Machaba, FN Cele, NN Mhlongo… - Cell biochemistry and …, 2016 - Springer
Tuberculosis, caused by Mycobacterium tuberculosis, is one of the most common causes of
death in the world. Mycobacterium tuberculosis-sliding clamp is a protein essential for many …

[HTML][HTML] Evaluation of peptide designing strategy against subunit reassociation in mucin 1: A steered molecular dynamics approach

J Lesitha Jeeva Kumari, R Jesu Jaya Sudan… - PloS one, 2017 - journals.plos.org
Subunit reassociation in mucin 1, a breast cancer tumor marker, is reported as one of the
critical factors for its cytoplasmic activation. Inhibition of its heterodimeric association would …