Status and prospects of marine NIS detection and monitoring through (e) DNA metabarcoding

S Duarte, PE Vieira, AS Lavrador, FO Costa - Science of the Total …, 2021 - Elsevier
In coastal ecosystems, non-indigenous species (NIS) are recognized as a major threat to
biodiversity, ecosystem functioning and socio-economic activities. Here we present a …

Integration of DNA-based approaches in aquatic ecological assessment using benthic macroinvertebrates

S Duarte, BR Leite, MJ Feio, FO Costa, AF Filipe - Water, 2021 - mdpi.com
Benthic macroinvertebrates are among the most used biological quality elements for
assessing the condition of all types of aquatic ecosystems worldwide (ie, fresh water …

DNA sequence and taxonomic gap analyses to quantify the coverage of aquatic cyanobacteria and eukaryotic microalgae in reference databases: Results of a survey …

N Salmaso, V Vasselon, F Rimet, M Vautier… - Science of the Total …, 2022 - Elsevier
The taxonomic identification of organisms based on the amplification of specific genetic
markers (metabarcoding) implicitly requires adequate discriminatory information and …

General principles for assignments of communities from eDNA: Open versus closed taxonomic databases

RC Blackman, JC Walser, L Rüber… - Environmental …, 2023 - Wiley Online Library
Metabarcoding of environmental DNA (eDNA) is a powerful tool for describing biodiversity,
such as finding keystone species or detecting invasive species in environmental samples …

[HTML][HTML] Gap analysis for DNA-based biomonitoring of aquatic ecosystems in China

F Li, Y Zhang, F Altermatt, X Zhang, Y Cai, Z Yang - Ecological Indicators, 2022 - Elsevier
DNA-based taxon identification is improving the assessment and management of
biodiversity in rivers. However, the lack of comprehensive DNA barcode reference libraries …

Compilation, revision, and annotation of DNA barcodes of marine invertebrate non-indigenous species (NIS) occurring in European coastal regions

AS Lavrador, JT Fontes, PE Vieira, FO Costa, S Duarte - Diversity, 2023 - mdpi.com
The introduction of non-indigenous species (NIS) is one of the major threats to the integrity
of European coastal ecosystems. DNA-based assessments have been increasingly adopted …

An overview of ecological indicators of fish to evaluate the anthropogenic pressures in aquatic ecosystems: from traditional to innovative DNA-based approaches

M Pinna, F Zangaro, B Saccomanno, C Scalone… - Water, 2023 - mdpi.com
In order to halt the loss of global biodiversity and considering the United Nations Decade for
Ocean Conservation Agenda, increasing efforts to improve biomonitoring programs and …

[HTML][HTML] Are well-studied marine biodiversity hotspots still blackspots for animal barcoding?

F Mugnai, E Meglécz, M Abbiati, G Bavestrello… - Global Ecology and …, 2021 - Elsevier
Marine biodiversity underpins ecosystem health and societal well-being. Preservation of
biodiversity hotspots is a global challenge. Molecular tools, like DNA barcoding and …

Marine litter colonization: Methodological challenges and recommendations

GE De-la-Torre, MB Romero Arribasplata… - Frontiers in Marine …, 2023 - frontiersin.org
Marine litter colonization by marine invertebrate species is a major global concern resulting
in the dispersal of potentially invasive species has been widely reported. However, there are …

Macrozoobenthos monitoring in Portuguese transitional waters in the scope of the water framework directive using morphology and DNA metabarcoding

S Duarte, PE Vieira, BR Leite, MAL Teixeira… - Estuarine, Coastal and …, 2023 - Elsevier
Despite the growing use and potential of DNA metabarcoding to improve and expedite
macrozoobenthos monitoring, its employment in Water Framework Directive (WFD) …