From NWChem to NWChemEx: Evolving with the computational chemistry landscape

K Kowalski, R Bair, NP Bauman, JS Boschen… - Chemical …, 2021 - ACS Publications
Since the advent of the first computers, chemists have been at the forefront of using
computers to understand and solve complex chemical problems. As the hardware and …

[HTML][HTML] Open source molecular modeling

S Pirhadi, J Sunseri, DR Koes - Journal of Molecular Graphics and …, 2016 - Elsevier
The success of molecular modeling and computational chemistry efforts are, by definition,
dependent on quality software applications. Open source software development provides …

GPU acceleration of all-electron electronic structure theory using localized numeric atom-centered basis functions

WP Huhn, B Lange, VW Yu, M Yoon, V Blum - Computer Physics …, 2020 - Elsevier
We present an implementation of all-electron density-functional theory for massively parallel
GPU-based platforms, using localized atom-centered basis functions and real-space …

[图书][B] Solving Nonlinear Equations with Iterative Methods: Solvers and Examples in Julia

CT Kelley - 2022 - SIAM
This book on solvers for nonlinear equations is a user-oriented guide to algorithms and
implementation. It is a sequel to [111], which used MATLAB for the solvers and examples …

Accelerated application development: The ORNL Titan experience

W Joubert, R Archibald, M Berrill, WM Brown… - Computers & Electrical …, 2015 - Elsevier
The use of computational accelerators such as NVIDIA GPUs and Intel Xeon Phi processors
is now widespread in the high performance computing community, with many applications …

Molecular dynamics simulation: methods and application

S Singh, VK Singh - Frontiers in protein structure, function, and dynamics, 2020 - Springer
The complexity of the 3D structure of a protein is still challenging in the area of structural
biology. Thermodynamics-based methods, including molecular dynamics (MD) simulations …

Charge transport in DNA nanowires connected to carbon nanotubes

B Tan, M Hodak, W Lu, J Bernholc - Physical Review B, 2015 - APS
DNA is perhaps the worlds most controllable nanowire, with potential applications in
nanoelectronics and sensing. However, understanding of its charge transport (CT) …

[PDF][PDF] Updating the SPP benchmark suite for extreme-scale systems

G Bauer, V Anisimov, G Arnold, B Bode… - Proceedings of Cry User …, 2017 - cug.org
Updating the SPP Benchmark Suite for Extreme-Scale Systems Page 1 Updating the SPP
Benchmark Suite for Extreme-Scale Systems Gregory Bauer, Victor Anisimov, Galen Arnold …

Kinship and loss

DW Riggs, E Peel, DW Riggs, E Peel - … studies: An introduction to the field, 2016 - Springer
This chapter explores how personhood is routinely denied in the context of certain losses (ie
the loss of a companion animal, and in the case of pregnancy loss), while in others certain …

[PDF][PDF] Expanding Blue Waters with improved acceleration capability

CL Mendes, GH Bauer, WT Kramer… - Proceedings of the …, 2014 - researchgate.net
Blue Waters, the first open-science supercomputer to achieve a sustained rate of one
petaflop/s on a broad mix of scientific applications, is the largest system ever built by Cray. It …