Transcription-factor-based biosensor engineering for applications in synthetic biology

N Ding, S Zhou, Y Deng - ACS Synthetic Biology, 2021 - ACS Publications
Transcription-factor-based biosensors (TFBs) are often used for metabolite detection,
adaptive evolution, and metabolic flux control. However, designing TFBs with superior …

Penicillium chrysogenum, a Vintage Model with a Cutting-Edge Profile in Biotechnology

F Fierro, I Vaca, NI Castillo, RO García-Rico, R Chávez - Microorganisms, 2022 - mdpi.com
The discovery of penicillin entailed a decisive breakthrough in medicine. No other medical
advance has ever had the same impact in the clinical practise. The fungus Penicillium …

An endoribonuclease-based feedforward controller for decoupling resource-limited genetic modules in mammalian cells

RD Jones, Y Qian, V Siciliano, B DiAndreth… - Nature …, 2020 - nature.com
Synthetic biology has the potential to bring forth advanced genetic devices for applications
in healthcare and biotechnology. However, accurately predicting the behavior of engineered …

[HTML][HTML] Context-aware synthetic biology by controller design: Engineering the mammalian cell

N Shakiba, RD Jones, R Weiss, D Del Vecchio - Cell systems, 2021 - cell.com
The rise of systems biology has ushered a new paradigm: the view of the cell as a system
that processes environmental inputs to drive phenotypic outputs. Synthetic biology provides …

[HTML][HTML] Allostery, and how to define and measure signal transduction

R Nussinov, CJ Tsai, H Jang - Biophysical chemistry, 2022 - Elsevier
Here we ask: What is productive signaling? How to define it, how to measure it, and most of
all, what are the parameters that determine it? Further, what determines the strength of …

High-yield ectoine production in engineered Corynebacterium glutamicum by fine metabolic regulation via plug-in repressor library

A Jiang, Y Song, J You, X Zhang, M Xu, Z Rao - Bioresource Technology, 2022 - Elsevier
Ectoine is a high-value protective and stabilizing agent with different applications in
biopharmaceuticals, biotechnology, and fine chemicals. Here, efficient production of ectoine …

Adaptive DNA amplification of synthetic gene circuit opens a way to overcome cancer chemoresistance

Y Wan, Q Mu, R Krzysztoń, J Cohen… - Proceedings of the …, 2023 - National Acad Sciences
Drug resistance continues to impede the success of cancer treatments, creating a need for
experimental model systems that are broad, yet simple, to allow the identification of …

Nonmonotone invasion landscape by noise-aware control of metastasis activator levels

Y Wan, J Cohen, M Szenk, KS Farquhar… - Nature Chemical …, 2023 - nature.com
A major pharmacological assumption is that lowering disease-promoting protein levels is
generally beneficial. For example, inhibiting metastasis activator BACH1 is proposed to …

Robust and tunable signal processing in mammalian cells via engineered covalent modification cycles

RD Jones, Y Qian, K Ilia, B Wang, MT Laub… - Nature …, 2022 - nature.com
Engineered signaling networks can impart cells with new functionalities useful for directing
differentiation and actuating cellular therapies. For such applications, the engineered …

[HTML][HTML] Adaptive circuits in synthetic biology

T Frei, M Khammash - Current Opinion in Systems Biology, 2021 - Elsevier
One of the most remarkable features of biological systems is their ability to adapt to the
constantly changing environment. By harnessing principles of control theory, synthetic …