A quantitative genomics map of rice provides genetic insights and guides breeding

X Wei, J Qiu, K Yong, J Fan, Q Zhang, H Hua, J Liu… - Nature Genetics, 2021 - nature.com
Extensive allelic variation in agronomically important genes serves as the basis of rice
breeding. Here, we present a comprehensive map of rice quantitative trait nucleotides …

基于基因组学的作物种质资源研究: 现状与展望

黎裕, 李英慧, 杨庆文, 张锦鹏, 张金梅, 邱丽娟… - 中国农业 …, 2015 - chinaagrisci.com
The scale of activities related to crop germplasm is massive, including basic work
(germplasm collecting, documentation, multiplication, conservation, regeneration …

[HTML][HTML] Warm temperature compromises JA-regulated basal resistance to enhance Magnaporthe oryzae infection in rice

J Qiu, J Xie, Y Chen, Z Shen, H Shi, NI Naqvi, Q Qian… - Molecular Plant, 2022 - cell.com
Abstract Changes in global temperatures profoundly affect the occurrence of plant diseases.
It is well known that rice blast can easily become epidemic in relatively warm weather …

Dating rice remains through phytolith carbon-14 study reveals domestication at the beginning of the Holocene

X Zuo, H Lu, L Jiang, J Zhang, X Yang… - Proceedings of the …, 2017 - National Acad Sciences
Phytolith remains of rice (Oryza sativa L.) recovered from the Shangshan site in the Lower
Yangtze of China have previously been recognized as the earliest examples of rice …

Evolution of flowering time genes in rice: From the paleolithic to the anthropocene

M Osnato - Plant, cell & environment, 2023 - Wiley Online Library
The evolutionary paths of humans and plants have crossed more than once throughout
millennia. While agriculture contributed to the evolution of societies in prehistory, human …

Genetic interactions between diverged alleles of Early heading date 1 (Ehd1) and Heading date 3a (Hd3a)/ RICE FLOWERING LOCUS T1 (RFT1) control differential heading …

J Zhao, H Chen, D Ren, H Tang, R Qiu, J Feng… - New …, 2015 - Wiley Online Library
Initiation of flowering, also called heading, in rice (Oryza sativa) is determined by the
florigens encoded by Heading date 3a (Hd3a) and RICE FLOWERING LOCUS T1 (RFT 1) …

Estimating inbreeding coefficients from NGS data: impact on genotype calling and allele frequency estimation

FG Vieira, M Fumagalli, A Albrechtsen… - Genome …, 2013 - genome.cshlp.org
Most methods for next-generation sequencing (NGS) data analyses incorporate information
regarding allele frequencies using the assumption of Hardy–Weinberg equilibrium (HWE) as …

[HTML][HTML] Genetic diversity and population structure of the Mediterranean sesame core collection with use of genome-wide SNPs developed by double digest RAD-Seq

M Basak, B Uzun, E Yol - PLoS one, 2019 - journals.plos.org
The Mediterranean sesame core collection contains agro-morphologically superior sesame
accessions from geographically diverse regions in four continents. In the present …

Genome-wide analyses reveal the role of noncoding variation in complex traits during rice domestication

XM Zheng, J Chen, HB Pang, S Liu, Q Gao… - Science …, 2019 - science.org
Genomes carry millions of noncoding variants, and identifying the tiny fraction with functional
consequences is a major challenge for genomics. We assessed the role of selection on long …

[HTML][HTML] Analysis of genetic diversity and population structure of sesame accessions from Africa and Asia as major centers of its cultivation

K Dossa, X Wei, Y Zhang, D Fonceka, W Yang, D Diouf… - Genes, 2016 - mdpi.com
Sesame is an important oil crop widely cultivated in Africa and Asia. Understanding the
genetic diversity of accessions from these continents is critical to designing breeding …