Cleavage and polyadenylation: Ending the message expands gene regulation

J Neve, R Patel, Z Wang, A Louey, AM Furger - RNA biology, 2017 - Taylor & Francis
Cleavage and polyadenylation (pA) is a fundamental step that is required for the maturation
of primary protein encoding transcripts into functional mRNAs that can be exported from the …

Regulation of neuronal RNA signatures by ELAV/Hu proteins

V Hilgers - Wiley Interdisciplinary Reviews: RNA, 2023 - Wiley Online Library
The RNA‐binding proteins encoded by the highly conserved elav/Hu gene family, found in
all metazoans, regulate the expression of a wide range of genes, at both the co …

[HTML][HTML] Cellular stress alters 3′ UTR landscape through alternative polyadenylation and isoform-specific degradation

D Zheng, R Wang, Q Ding, T Wang, B Xie, L Wei… - Nature …, 2018 - nature.com
Most eukaryotic genes express alternative polyadenylation (APA) isoforms with different 3′
UTR lengths, production of which is influenced by cellular conditions. Here, we show that …

High-resolution analysis of cell-state transitions in yeast suggests widespread transcriptional tuning by alternative starts

M Chia, C Li, S Marques, V Pelechano, NM Luscombe… - Genome biology, 2021 - Springer
Background The start and end sites of messenger RNAs (TSSs and TESs) are highly
regulated, often in a cell-type-specific manner. Yet the contribution of transcript diversity in …

Plasticity of nuclear and cytoplasmic stress responses of RNA-binding proteins

M Backlund, F Stein, M Rettel, T Schwarzl… - Nucleic acids …, 2020 - academic.oup.com
Cellular stress causes multifaceted reactions to trigger adaptive responses to environmental
cues at all levels of the gene expression pathway. RNA-binding proteins (RBP) are key …

Alternative polyadenylation: An enigma of transcript length variation in health and disease

NK Mohanan, F Shaji, GR Koshre… - Wiley Interdisciplinary …, 2022 - Wiley Online Library
Alternative polyadenylation (APA) is a molecular mechanism during a pre‐mRNA
processing that involves usage of more than one polyadenylation site (PA‐site) generating …

Poly (A)-ClickSeq: click-chemistry for next-generation 3΄-end sequencing without RNA enrichment or fragmentation

A Routh, P Ji, E Jaworski, Z Xia, W Li… - Nucleic acids …, 2017 - academic.oup.com
The recent emergence of alternative polyadenylation (APA) as an engine driving
transcriptomic diversity has stimulated the development of sequencing methodologies …

[HTML][HTML] Differential alternative polyadenylation landscapes mediate hematopoietic stem cell activation and regulate glutamine metabolism

P Sommerkamp, S Altamura, S Renders, A Narr… - Cell stem cell, 2020 - cell.com
Alternative polyadenylation (APA) is emerging as an important regulatory mechanism of
RNA and protein isoform expression by controlling 3′ untranslated region (3′-UTR) …

Regulating the regulator: a survey of mechanisms from transcription to translation controlling expression of mammalian cell cycle kinase Aurora A

R Cacioppo, C Lindon - Open Biology, 2022 - royalsocietypublishing.org
Aurora Kinase A (AURKA) is a positive regulator of mitosis with a strict cell cycle-dependent
expression pattern. Recently, novel oncogenic roles of AURKA have been uncovered that …

Comparative analysis of alternative polyadenylation in S. cerevisiae and S. pombe

X Liu, M Hoque, M Larochelle, JF Lemay… - Genome …, 2017 - genome.cshlp.org
Alternative polyadenylation (APA) is a widespread mechanism that generates mRNA
isoforms with distinct properties. Here we have systematically mapped and compared …