Heterogeneity in protein folding and unfolding reactions
S Bhatia, JB Udgaonkar - Chemical Reviews, 2022 - ACS Publications
Proteins have dynamic structures that undergo chain motions on time scales spanning from
picoseconds to seconds. Resolving the resultant conformational heterogeneity is essential …
picoseconds to seconds. Resolving the resultant conformational heterogeneity is essential …
How cooperative are protein folding and unfolding transitions?
P Malhotra, JB Udgaonkar - Protein Science, 2016 - Wiley Online Library
A thermodynamically and kinetically simple picture of protein folding envisages only two
states, native (N) and unfolded (U), separated by a single activation free energy barrier, and …
states, native (N) and unfolded (U), separated by a single activation free energy barrier, and …
Folding and stability of ankyrin repeats control biological protein function
A Kumar, J Balbach - Biomolecules, 2021 - mdpi.com
Ankyrin repeat proteins are found in all three kingdoms of life. Fundamentally, these proteins
are involved in protein-protein interaction in order to activate or suppress biological …
are involved in protein-protein interaction in order to activate or suppress biological …
A PDZ tandem repeat folds and unfolds via different pathways
V Pennacchietti, S di Matteo, L Pagano… - Protein …, 2024 - Wiley Online Library
Protein folding and unfolding experiments are interpreted under the assumption of
microscopic reversibility, that is, that at equilibrium one process is the reverse of the other …
microscopic reversibility, that is, that at equilibrium one process is the reverse of the other …
The Wako-Saitô-Muñoz-Eaton model for predicting protein folding and dynamics
K Ooka, R Liu, M Arai - Molecules, 2022 - mdpi.com
Despite the recent advances in the prediction of protein structures by deep neutral networks,
the elucidation of protein-folding mechanisms remains challenging. A promising theory for …
the elucidation of protein-folding mechanisms remains challenging. A promising theory for …
[HTML][HTML] Thermodynamics and folding landscapes of large proteins from a statistical mechanical model
Statistical mechanical models that afford an intermediate resolution between macroscopic
chemical models and all-atom simulations have been successful in capturing folding …
chemical models and all-atom simulations have been successful in capturing folding …
Folding cooperativity and allosteric function in the tandem-repeat protein class
A Perez-Riba, M Synakewicz… - … Transactions of the …, 2018 - royalsocietypublishing.org
The term allostery was originally developed to describe structural changes in one binding
site induced by the interaction of a partner molecule with a distant binding site, and it has …
site induced by the interaction of a partner molecule with a distant binding site, and it has …
[HTML][HTML] A hierarchy of coupling free energies underlie the thermodynamic and functional architecture of protein structures
AN Naganathan, A Kannan - Current Research in Structural Biology, 2021 - Elsevier
Protein sequences and structures evolve by satisfying varied physical and biochemical
constraints. This multi-level selection is enabled not just by the patterning of amino acids on …
constraints. This multi-level selection is enabled not just by the patterning of amino acids on …
Ruggedness in the free energy landscape dictates misfolding of the prion protein
Experimental determination of the key features of the free energy landscapes of proteins,
which dictate their adeptness to fold correctly, or propensity to misfold and aggregate and …
which dictate their adeptness to fold correctly, or propensity to misfold and aggregate and …
Toward a quantitative description of microscopic pathway heterogeneity in protein folding
How many structurally different microscopic routes are accessible to a protein molecule
while folding? This has been a challenging question to address experimentally as single …
while folding? This has been a challenging question to address experimentally as single …