Detection, structure and function of modified DNA bases

A Hofer, ZJ Liu, S Balasubramanian - Journal of the American …, 2019 - ACS Publications
While some DNA base modifications such as 5-methylcytosine have been known and
studied for decades, recent discoveries of a number of other modified bases have stimulated …

Methods for detection of cytosine and thymine modifications in DNA

M Berney, JF McGouran - Nature Reviews Chemistry, 2018 - nature.com
Methylation of cytosine at the 5-position is a common epigenetic modification in mammalian
DNA and plays an important role in regulating gene expression. Oxidized derivatives of 5 …

Bioorthogonal reaction-mediated enzymatic elongation-driven dendritic nanoassembly for genome-wide analysis of 5-hydroxymethyluracil in breast tissues

S Jiang, Y Cai, Q Zhang, Q Liu, Z Wang, C Zhang - Nano Letters, 2023 - ACS Publications
5-Hydroxymethyluracil (5hmU) is an oxidation derivative of thymine in the genomes of
various organisms and may serve as both an epigenetic mark and a cancer biomarker …

Assessment of DNA epigenetic modifications

BF Yuan - Chemical Research in Toxicology, 2019 - ACS Publications
DNA molecules utilize adenine, thymine, cytosine, and guanine for coding genetic
information. In addition to these four canonical nucleobases, DNA molecules also contain a …

Cellular macromolecules-tethered DNA walking indexing to explore nanoenvironments of chromatin modifications

F Chen, M Bai, X Cao, J Xue, Y Zhao, N Wu… - Nature …, 2021 - nature.com
Exploring spatial organization and relationship of diverse biomolecules within cellular
nanoenvironments is important to elucidate the fundamental processes of life. However, it …

Differentiated visualization of single-cell 5-hydroxymethylpyrimidines with microfluidic hydrogel encoding

F Chen, J Xue, J Zhang, M Bai, X Yu… - Journal of the …, 2020 - ACS Publications
5-Hydroxymethyluracil (5hmU) is found in the genomes of a diverse range of organisms as
another kind of 5-hydroxymethylpyrimidine, with the exception of 5-hydroxymethylcytosine …

Genome-wide distribution of 5-hydroxymethyluracil and chromatin accessibility in the Breviolum minutum genome

GK Marinov, X Chen, MP Swaffer, T Xiang… - Genome Biology, 2024 - Springer
Background In dinoflagellates, a unique and extremely divergent genomic and nuclear
organization has evolved. The highly unusual features of dinoflagellate nuclei and genomes …

Quantification and mapping of DNA modifications

Y Dai, BF Yuan, YQ Feng - RSC chemical biology, 2021 - pubs.rsc.org
Apart from the four canonical nucleobases, DNA molecules carry a number of natural
modifications. Substantial evidence shows that DNA modifications can regulate diverse …

Detection and Application of 5-Formylcytosine and 5-Formyluracil in DNA

Y Wang, X Zhang, G Zou, S Peng, C Liu… - Accounts of chemical …, 2019 - ACS Publications
Conspectus Nucleic acids contain a variety of different base modifications, such as
decoration at the fifth position of cytosine, which is one of the most important epigenetic …

Synthesis of Nucleobase‐Modified Oligonucleotides by Post‐Synthetic Modification in Solution

Y Ito, Y Hari - The Chemical Record, 2022 - Wiley Online Library
Oligonucleotides containing modified nucleobases have applications in various
technologies. In general, to synthesize oligonucleotides with different nucleobase structures …