Interpreting the genomic landscape of speciation: a road map for finding barriers to gene flow

M Ravinet, R Faria, RK Butlin, J Galindo… - Journal of …, 2017 - academic.oup.com
Speciation, the evolution of reproductive isolation among populations, is continuous,
complex, and involves multiple, interacting barriers. Until it is complete, the effects of this …

A genomic perspective on hybridization and speciation

BA Payseur, LH Rieseberg - Molecular ecology, 2016 - Wiley Online Library
Hybridization among diverging lineages is common in nature. Genomic data provide a
special opportunity to characterize the history of hybridization and the genetic basis of …

Genomic landscape of the global oak phylogeny

AL Hipp, PS Manos, M Hahn, M Avishai… - New …, 2020 - Wiley Online Library
The tree of life is highly reticulate, with the history of population divergence emerging from
populations of gene phylogenies that reflect histories of introgression, lineage sorting and …

Diversification, adaptation, and community assembly of the American oaks (Quercus), a model clade for integrating ecology and evolution

J Cavender‐Bares - New Phytologist, 2019 - Wiley Online Library
Contents Summary 669 I. Model clades for the study and integration of ecology and
evolution 670 II. Oaks: an important model clade 671 III. Insights from the history of the …

Oaks: an evolutionary success story

A Kremer, AL Hipp - New Phytologist, 2020 - Wiley Online Library
The genus Quercus is among the most widespread and species‐rich tree genera in the
northern hemisphere. The extraordinary species diversity in America and Asia together with …

Sympatric parallel diversification of major oak clades in the Americas and the origins of Mexican species diversity

AL Hipp, PS Manos, A González‐Rodríguez… - New …, 2018 - Wiley Online Library
Summary Oaks (Quercus, Fagaceae) are the dominant tree genus of North America in
species number and biomass, and Mexico is a global center of oak diversity. Understanding …

Misconceptions on missing data in RAD-seq phylogenetics with a deep-scale example from flowering plants

DAR Eaton, EL Spriggs, B Park… - Systematic …, 2017 - academic.oup.com
Restriction-site associated DNA (RAD) sequencing and related methods rely on the
conservation of enzyme recognition sites to isolate homologous DNA fragments for …

Practical considerations for plant phylogenomics

MR McKain, MG Johnson… - Applications in plant …, 2018 - Wiley Online Library
The past decade has seen a major breakthrough in our ability to easily and inexpensively
sequence genome‐scale data from diverse lineages. The development of high‐throughput …

The utility of single nucleotide polymorphism (SNP) data in phylogenetics

AD Leaché, JR Oaks - Annual Review of Ecology, Evolution …, 2017 - annualreviews.org
Resolving the genealogy of life—the phylogenetic relationships that describe the
evolutionary history of species—remains one of the great challenges of systematic biology …

[HTML][HTML] Next-generation biology: sequencing and data analysis approaches for non-model organisms

RR da Fonseca, A Albrechtsen, GE Themudo… - Marine genomics, 2016 - Elsevier
As sequencing technologies become more affordable, it is now realistic to propose studying
the evolutionary history of virtually any organism on a genomic scale. However, when …