Multi-resolution simulation of DNA transport through large synthetic nanostructures

A Choudhary, C Maffeo, A Aksimentiev - Physical Chemistry Chemical …, 2022 - pubs.rsc.org
Modeling and simulation has become an invaluable partner in development of nanopore
sensing systems. The key advantage of the nanopore sensing method–the ability to rapidly …

Reactive Monte Carlo simulations for charge regulation of colloidal particles

A Bakhshandeh, D Frydel, Y Levin - The Journal of Chemical Physics, 2022 - pubs.aip.org
We use a reactive Monte Carlo simulation method and the primitive model of electrolyte to
study acid–base equilibrium that controls charge regulation in colloidal systems. The …

A numerical investigation of analyte size effects in nanopore sensing systems

K Szuttor, P Kreissl, C Holm - The Journal of Chemical Physics, 2021 - pubs.aip.org
We investigate the ionic current modulation in DNA nanopore translocation setups by
numerically solving the electrokinetic mean-field equations for an idealized model …

[PDF][PDF] Modeling the translocation of DNA structures through nanopores

K Szuttor - 2021 - elib.uni-stuttgart.de
The deoxyribonucleic acid (DNA) molecule is built up by two polynucleotides that form a
double helix. It is widely known as an information carrier for the building plans of any life on …

[引用][C] ESPResSo, a Versatile Open-Source Software Package for Simulating Soft Matter Systems

R Weeber, JN Grad, D Beyer, PM Blanco, P Kreissl… - 2024 - Elsevier