Correcting motion induced fluorescence artifacts in two-channel neural imaging

MS Creamer, KS Chen, AM Leifer… - PLoS computational …, 2022 - journals.plos.org
Imaging neural activity in a behaving animal presents unique challenges in part because
motion from an animal's movement creates artifacts in fluorescence intensity time-series that …

TACI: An ImageJ plugin for 3D calcium imaging analysis

AA Omelchenko, H Bai, S Hussain… - Journal of …, 2022 - pmc.ncbi.nlm.nih.gov
Research in neuroscience has evolved to use complex imaging and computational tools to
extract comprehensive information from data sets. Calcium imaging is a widely used …

[HTML][HTML] Automatic monitoring of whole-body neural activity in behaving Hydra

A Hanson, R Reme, N Telerman, W Yamamoto… - bioRxiv, 2023 - ncbi.nlm.nih.gov
The ability to record every spike from every neuron in a behaving animal is one of the holy
grails of neuroscience. Here, we report coming one step closer towards this goal with the …

An open-source method for analysis of confocal calcium imaging with sparse cells

AA Omelchenko, L Ni - bioRxiv, 2021 - biorxiv.org
Background The research in the neuroscience field has evolved to use complex imaging
and computational tools to extract comprehensive information from data sets. Calcium …