Stochastic switching of cell fate in microbes
Microbes transiently differentiate into distinct, specialized cell types to generate functional
diversity and cope with changing environmental conditions. Though alternate programs …
diversity and cope with changing environmental conditions. Though alternate programs …
Diverse spatial expression patterns emerge from unified kinetics of transcriptional bursting
How transcriptional bursting relates to gene regulation is a central question that has
persisted for more than a decade. Here, we measure nascent transcriptional activity in early …
persisted for more than a decade. Here, we measure nascent transcriptional activity in early …
Glycolytic oscillations and limits on robust efficiency
FA Chandra, G Buzi, JC Doyle - science, 2011 - science.org
Both engineering and evolution are constrained by trade-offs between efficiency and
robustness, but theory that formalizes this fact is limited. For a simple two-state model of …
robustness, but theory that formalizes this fact is limited. For a simple two-state model of …
Delayed protein synthesis reduces the correlation between mRNA and protein fluctuations
T Gedeon, P Bokes - Biophysical journal, 2012 - cell.com
Recent experimental results indicate that, in single Escherichia coli cells, the fluctuations in
mRNA level are uncorrelated with those of protein. However, a basic two-stage model for …
mRNA level are uncorrelated with those of protein. However, a basic two-stage model for …
Stochastic chemical kinetics
This book is, of course, about stochastic chemical kinetics. Chemical kinetics is a prototype
of nonlinear science, since the rate of reaction is generally a nonlinear function of the …
of nonlinear science, since the rate of reaction is generally a nonlinear function of the …
Synergistic dual positive feedback loops established by molecular sequestration generate robust bimodal response
OS Venturelli, H El-Samad… - Proceedings of the …, 2012 - National Acad Sciences
Feedback loops are ubiquitous features of biological networks and can produce significant
phenotypic heterogeneity, including a bimodal distribution of gene expression across an …
phenotypic heterogeneity, including a bimodal distribution of gene expression across an …
A CMOS/thin-film fluorescence contact imaging microsystem for DNA analysis
A hybrid CMOS/thin-film microsystem for fluorescence contact imaging is presented. The
microsystem integrates a high-performance optical interference filter and a 128× 128 pixel …
microsystem integrates a high-performance optical interference filter and a 128× 128 pixel …
Stochastic stability of Markovian switching genetic regulatory networks
In this Letter, taking into account the structure variations at discrete time instances during the
process of gene regulation, a hybrid genetic regulatory networks model based on Markov …
process of gene regulation, a hybrid genetic regulatory networks model based on Markov …
Exact and approximate distributions of protein and mRNA levels in the low-copy regime of gene expression
Gene expression at the single-cell level incorporates reaction mechanisms which are
intrinsically stochastic as they involve molecular species present at low copy numbers. The …
intrinsically stochastic as they involve molecular species present at low copy numbers. The …
Constraints on fluctuations in sparsely characterized biological systems
A Hilfinger, TM Norman, G Vinnicombe, J Paulsson - Physical review letters, 2016 - APS
Biochemical processes are inherently stochastic, creating molecular fluctuations in
otherwise identical cells. Such “noise” is widespread but has proven difficult to analyze …
otherwise identical cells. Such “noise” is widespread but has proven difficult to analyze …