Stochastic switching of cell fate in microbes

TM Norman, ND Lord, J Paulsson… - Annual review of …, 2015 - annualreviews.org
Microbes transiently differentiate into distinct, specialized cell types to generate functional
diversity and cope with changing environmental conditions. Though alternate programs …

Diverse spatial expression patterns emerge from unified kinetics of transcriptional bursting

B Zoller, SC Little, T Gregor - Cell, 2018 - cell.com
How transcriptional bursting relates to gene regulation is a central question that has
persisted for more than a decade. Here, we measure nascent transcriptional activity in early …

Glycolytic oscillations and limits on robust efficiency

FA Chandra, G Buzi, JC Doyle - science, 2011 - science.org
Both engineering and evolution are constrained by trade-offs between efficiency and
robustness, but theory that formalizes this fact is limited. For a simple two-state model of …

Delayed protein synthesis reduces the correlation between mRNA and protein fluctuations

T Gedeon, P Bokes - Biophysical journal, 2012 - cell.com
Recent experimental results indicate that, in single Escherichia coli cells, the fluctuations in
mRNA level are uncorrelated with those of protein. However, a basic two-stage model for …

Stochastic chemical kinetics

P Érdi, G Lente - Theory and (Mostly) Systems Biological Applications, 2014 - Springer
This book is, of course, about stochastic chemical kinetics. Chemical kinetics is a prototype
of nonlinear science, since the rate of reaction is generally a nonlinear function of the …

Synergistic dual positive feedback loops established by molecular sequestration generate robust bimodal response

OS Venturelli, H El-Samad… - Proceedings of the …, 2012 - National Acad Sciences
Feedback loops are ubiquitous features of biological networks and can produce significant
phenotypic heterogeneity, including a bimodal distribution of gene expression across an …

A CMOS/thin-film fluorescence contact imaging microsystem for DNA analysis

RR Singh, D Ho, A Nilchi, G Gulak… - IEEE Transactions on …, 2010 - ieeexplore.ieee.org
A hybrid CMOS/thin-film microsystem for fluorescence contact imaging is presented. The
microsystem integrates a high-performance optical interference filter and a 128× 128 pixel …

Stochastic stability of Markovian switching genetic regulatory networks

Y Sun, G Feng, J Cao - Physics Letters A, 2009 - Elsevier
In this Letter, taking into account the structure variations at discrete time instances during the
process of gene regulation, a hybrid genetic regulatory networks model based on Markov …

Exact and approximate distributions of protein and mRNA levels in the low-copy regime of gene expression

P Bokes, JR King, ATA Wood, M Loose - Journal of mathematical biology, 2012 - Springer
Gene expression at the single-cell level incorporates reaction mechanisms which are
intrinsically stochastic as they involve molecular species present at low copy numbers. The …

Constraints on fluctuations in sparsely characterized biological systems

A Hilfinger, TM Norman, G Vinnicombe, J Paulsson - Physical review letters, 2016 - APS
Biochemical processes are inherently stochastic, creating molecular fluctuations in
otherwise identical cells. Such “noise” is widespread but has proven difficult to analyze …