Extreme environments offer an unprecedented opportunity to understand microbial eukaryotic ecology, evolution, and genome biology
HB Rappaport, AM Oliverio - Nature Communications, 2023 - nature.com
Research in extreme environments has substantially expanded our understanding of the
ecology and evolution of life on Earth, but a major group of organisms has been largely …
ecology and evolution of life on Earth, but a major group of organisms has been largely …
Composition and spatial-temporal dynamics of phytoplankton community shaped by environmental selection and interactions in the Jiaozhou Bay
S Liu, Z Cui, Y Zhao, N Chen - Water Research, 2022 - Elsevier
Abstract The Jiaozhou Bay as a model marine ecosystem in China has been intensively
investigated over the last 90 years. However, detailed phytoplankton community …
investigated over the last 90 years. However, detailed phytoplankton community …
metaPR2: A database of eukaryotic 18S rRNA metabarcodes with an emphasis on protists
In recent years, metabarcoding has become the method of choice for investigating the
composition and assembly of microbial eukaryotic communities. The number of …
composition and assembly of microbial eukaryotic communities. The number of …
An environmental DNA primer for microbial and restoration ecology
Abstract Environmental DNA (eDNA) sequencing—DNA collected from the environment
from living cells or shed DNA—was first developed for working with microbes and has …
from living cells or shed DNA—was first developed for working with microbes and has …
Defensive symbiosis against giant viruses in amoebae
P Arthofer, V Delafont, A Willemsen… - Proceedings of the …, 2022 - National Acad Sciences
Protists are important regulators of microbial communities and key components in food webs
with impact on nutrient cycling and ecosystem functioning. In turn, their activity is shaped by …
with impact on nutrient cycling and ecosystem functioning. In turn, their activity is shaped by …
Microbiome predators in changing soils
S Hu, G Li, A Berlinches de Gea… - Environmental …, 2023 - Wiley Online Library
Microbiome predators shape the soil microbiome and thereby soil functions. However, this
knowledge has been obtained from small‐scale observations in fundamental rather than …
knowledge has been obtained from small‐scale observations in fundamental rather than …
DNA sequence and taxonomic gap analyses to quantify the coverage of aquatic cyanobacteria and eukaryotic microalgae in reference databases: Results of a survey …
N Salmaso, V Vasselon, F Rimet, M Vautier… - Science of the Total …, 2022 - Elsevier
The taxonomic identification of organisms based on the amplification of specific genetic
markers (metabarcoding) implicitly requires adequate discriminatory information and …
markers (metabarcoding) implicitly requires adequate discriminatory information and …
Groundwater environmental DNA metabarcoding reveals hidden diversity and reflects land‐use and geology
Despite being the most important source of liquid freshwater on the planet, groundwater is
severely threatened by climate change, agriculture, or industrial mining. It is thus extensively …
severely threatened by climate change, agriculture, or industrial mining. It is thus extensively …
[HTML][HTML] Toward a common set of functional traits for soil protists
Protists are major actors of soil communities and play key roles in shaping food webs,
community assembly, and ecosystem processes, yet their functional diversity is …
community assembly, and ecosystem processes, yet their functional diversity is …
VESPA: an optimized protocol for accurate metabarcoding-based characterization of vertebrate eukaryotic endosymbiont and parasite assemblages
Protocols for characterizing taxonomic assemblages by deep sequencing of short DNA
barcode regions (metabarcoding) have revolutionized our understanding of microbial …
barcode regions (metabarcoding) have revolutionized our understanding of microbial …