Advantages and limitations of UV cross‐linking analysis of protein–RNA interactomes in microbes

S Esteban‐Serna, H McCaughan… - Molecular …, 2023 - Wiley Online Library
RNA‐binding proteins (RBPs) govern the lifespan of nearly all transcripts and play key roles
in adaptive responses in microbes. A robust approach to examine protein–RNA interactions …

Transcriptomic and biochemical analyses revealed antifungal mechanism of trans-anethole on Aspergillus flavus growth

JD Lei, Q Li, SB Zhang, YY Lv, HC Zhai, S Wei… - Applied Microbiology …, 2023 - Springer
Plant volatile compounds have great potential for preventing and controlling fungal spoilage
in post-harvest grains. Recently, we have reported the antifungal effects of trans-anethole …

A global survey of small RNA interactors identifies KhpA and KhpB as major RNA-binding proteins in Fusobacterium nucleatum

Y Zhu, F Ponath, V Cosi, J Vogel - Nucleic Acids Research, 2024 - academic.oup.com
The common oral microbe Fusobacterium nucleatum has recently drawn attention after it
was found to colonize tumors throughout the human body. Fusobacteria are also interesting …

R-DeeP/TripepSVM identifies the RNA-binding OB-fold-like protein PatR as regulator of heterocyst patterning

M Brenes-Álvarez, HR Ropp… - Nucleic Acids …, 2024 - academic.oup.com
RNA-binding proteins (RBPs) are central components of gene regulatory networks. The
differentiation of heterocysts in filamentous cyanobacteria is an example of cell …

Interrogation of RNA-protein interaction dynamics in bacterial growth

M Monti, R Herman, L Mancini… - Molecular Systems …, 2024 - embopress.org
Characterising RNA–protein interaction dynamics is fundamental to understand how
bacteria respond to their environment. In this study, we have analysed the dynamics of 91 …

[PDF][PDF] Improved RNA stability estimation through bayesian modeling reveals most bacterial transcripts have sub-minute half-lives

L Jenniches, C Michaux, S Reichardt, J Vogel… - bioRxiv, 2023 - biorxiv.org
RNA decay is a crucial mechanism for regulating gene expression in response to
environmental stresses. In bacteria, RNA-binding proteins (RBPs) are known to be involved …

Improved RNA stability estimation through Bayesian modeling reveals most Salmonella transcripts have subminute half-lives

L Jenniches, C Michaux, L Popella… - Proceedings of the …, 2024 - National Acad Sciences
RNA decay is a crucial mechanism for regulating gene expression in response to
environmental stresses. In bacteria, RNA-binding proteins (RBPs) are known to be involved …

[HTML][HTML] RNA BINDING PROTEINS (RBPs) ON GENETIC STABILITY AND DISEASES

AT Aborode, OA Abass, S Nasiru, MU Eigbobo… - Global Medical …, 2024 - Elsevier
RNA-binding proteins (RBPs) are integral components of cellular machinery, playing crucial
roles in the regulation of gene expression and maintaining genetic stability. Their …

Host factor RBMX2 promotes epithelial cell apoptosis by downregulating APAF-1's Retention Intron after Mycobacterium bovis infection

C Wang, Y Jiang, Z Yang, H Xu, AK Khalid… - Frontiers in …, 2024 - frontiersin.org
The Mycobacterium tuberculosis variant bovis (M. bovis) is a highly pathogenic
environmental microorganism that causes bovine tuberculosis (bTB), a significant zoonotic …

RNA-binding proteins identified by R-DeeP/TripepSVM are involved in heterocyst differentiation

M Brenes-Álvarez, HR Ropp, D Papagiannidis, C Potel… - bioRxiv, 2024 - biorxiv.org
RNA-binding proteins (RBPs) are central components of gene regulatory networks. The
differentiation of heterocysts in filamentous cyanobacteria is an example of cell …