Peroxisomes take shape

JJ Smith, JD Aitchison - Nature reviews Molecular cell biology, 2013 - nature.com
Peroxisomes carry out various oxidative reactions that are tightly regulated to adapt to the
changing needs of the cell and varying external environments. Accordingly, they are …

[HTML][HTML] Kinetic models in industrial biotechnology–improving cell factory performance

J Almquist, M Cvijovic, V Hatzimanikatis, J Nielsen… - Metabolic …, 2014 - Elsevier
An increasing number of industrial bioprocesses capitalize on living cells by using them as
cell factories that convert sugars into chemicals. These processes range from the production …

Advanced strategies for production of natural products in yeast

R Chen, S Yang, L Zhang, YJ Zhou - Iscience, 2020 - cell.com
Natural products account for more than 50% of all small-molecule pharmaceutical agents
currently in clinical use. However, low availability often becomes problematic when a …

Function of C/EBPδ in a regulatory circuit that discriminates between transient and persistent TLR4-induced signals

V Litvak, SA Ramsey, AG Rust, DE Zak… - Nature …, 2009 - nature.com
The innate immune system is like a double-edged sword: it is absolutely required for host
defense against infection, but when uncontrolled, it can trigger a plethora of inflammatory …

Colored extrinsic fluctuations and stochastic gene expression

V Shahrezaei, JF Ollivier, PS Swain - Molecular systems biology, 2008 - embopress.org
Stochasticity is both exploited and controlled by cells. Although the intrinsic stochasticity
inherent in biochemistry is relatively well understood, cellular variation, or 'noise', is …

Impact of gene expression noise on organismal fitness and the efficacy of natural selection

Z Wang, J Zhang - Proceedings of the National Academy of …, 2011 - National Acad Sciences
Gene expression noise is a universal phenomenon across all life forms. Although beneficial
under certain circumstances, expression noise is generally thought to be deleterious …

Metabolic network remodelling enhances yeast's fitness on xylose using aerobic glycolysis

X Li, Y Wang, G Li, Q Liu, R Pereira, Y Chen… - Nature Catalysis, 2021 - nature.com
The reprogramming of metabolism in response to switching the carbon source from glucose
to non-preferred carbon sources is well-studied for yeast. However, understanding how …

Transcription factor module NLP–NIGT1 fine-tunes NITRATE TRANSPORTER2.1 expression

Y Ueda, S Yanagisawa - Plant Physiology, 2023 - academic.oup.com
Arabidopsis (Arabidopsis thaliana) high-affinity NITRATE TRANSPORTER2. 1 (NRT2. 1)
plays a dominant role in the uptake of nitrate, the most important nitrogen (N) source for most …

Unravelling evolutionary strategies of yeast for improving galactose utilization through integrated systems level analysis

KK Hong, W Vongsangnak… - Proceedings of the …, 2011 - National Acad Sciences
Identification of the underlying molecular mechanisms for a derived phenotype by adaptive
evolution is difficult. Here, we performed a systems-level inquiry into the metabolic changes …

Genomic analysis reveals a tight link between transcription factor dynamics and regulatory network architecture

R Jothi, S Balaji, A Wuster, JA Grochow… - Molecular systems …, 2009 - embopress.org
Although several studies have provided important insights into the general principles of
biological networks, the link between network organization and the genome‐scale dynamics …