Cancer proteogenomics: current impact and future prospects
Genomic analyses in cancer have been enormously impactful, leading to the identification of
driver mutations and development of targeted therapies. But the functions of the vast majority …
driver mutations and development of targeted therapies. But the functions of the vast majority …
Feature selection revisited in the single-cell era
Recent advances in single-cell biotechnologies have resulted in high-dimensional datasets
with increased complexity, making feature selection an essential technique for single-cell …
with increased complexity, making feature selection an essential technique for single-cell …
Guidelines for bioinformatics of single-cell sequencing data analysis in Alzheimer's disease: review, recommendation, implementation and application
Alzheimer's disease (AD) is the most common form of dementia, characterized by
progressive cognitive impairment and neurodegeneration. Extensive clinical and genomic …
progressive cognitive impairment and neurodegeneration. Extensive clinical and genomic …
[HTML][HTML] Single-cell ATAC sequencing analysis: from data preprocessing to hypothesis generation
Most genetic variations associated with human complex traits are located in non-coding
genomic regions. Therefore, understanding the genotype-to-phenotype axis requires a …
genomic regions. Therefore, understanding the genotype-to-phenotype axis requires a …
Integrative single-cell analysis of allele-specific copy number alterations and chromatin accessibility in cancer
Cancer progression is driven by both somatic copy number aberrations (CNAs) and
chromatin remodeling, yet little is known about the interplay between these two classes of …
chromatin remodeling, yet little is known about the interplay between these two classes of …
scImmOmics: a manually curated resource of single-cell multi-omics immune data
YY Li, LW Zhou, FC Qian, QL Fang, ZM Yu… - Nucleic Acids …, 2025 - academic.oup.com
Single-cell sequencing technology has enabled the discovery and characterization of
subpopulations of immune cells with unique functions, which is critical for revealing immune …
subpopulations of immune cells with unique functions, which is critical for revealing immune …
Single-cell multiomics guided mechanistic understanding of Fontan-associated liver disease
The Fontan operation is the current standard of care for single-ventricle congenital heart
disease. Individuals with a Fontan circulation (FC) exhibit central venous hypertension and …
disease. Individuals with a Fontan circulation (FC) exhibit central venous hypertension and …
A molecular atlas of the human postmenopausal fallopian tube and ovary from single-cell RNA and ATAC sequencing
As part of the Human Cell Atlas Initiative, our goal is to generate single-cell transcriptomics
(single-cell RNA sequencing [scRNA-seq], 86,708 cells) and regulatory (single-cell assay on …
(single-cell RNA sequencing [scRNA-seq], 86,708 cells) and regulatory (single-cell assay on …
Single-cell chromatin accessibility profiling of acute myeloid leukemia reveals heterogeneous lineage composition upon therapy-resistance
Acute myeloid leukemia (AML) is a heterogeneous disease characterized by high rate of
therapy resistance. Since the cell of origin can impact response to therapy, it is crucial to …
therapy resistance. Since the cell of origin can impact response to therapy, it is crucial to …
scaDA: a novel statistical method for differential analysis of single-cell chromatin accessibility sequencing data
Single-cell ATAC-seq sequencing data (scATAC-seq) has been widely used to investigate
chromatin accessibility on the single-cell level. One important application of scATAC-seq …
chromatin accessibility on the single-cell level. One important application of scATAC-seq …