Recent advances in oomycete genomics

J McGowan, DA Fitzpatrick - Advances in genetics, 2020 - Elsevier
The oomycetes are a class of ubiquitous, filamentous microorganisms that include some of
the biggest threats to global food security and natural ecosystems. Within the oomycete …

Large sub-clonal variation in Phytophthora infestans from recent severe late blight epidemics in India

T Dey, A Saville, K Myers, S Tewari, DEL Cooke… - Scientific reports, 2018 - nature.com
The population structure of the Phytophthora infestans populations that caused the recent
2013–14 late blight epidemic in eastern India (EI) and northeastern India (NEI) was …

Cleavage of a pathogen apoplastic protein by plant subtilases activates host immunity

S Wang, R Xing, Y Wang, H Shu, S Fu, J Huang… - The New …, 2021 - JSTOR
• The plant apoplast is a harsh environment in which hydrolytic enzymes, especially
proteases, accumulate during pathogen infection. However, the defense functions of most …

Niche-specific metabolic adaptation in biotrophic and necrotrophic oomycetes is manifested in differential use of nutrients, variation in gene content, and enzyme …

AMV Ah-Fong, MS Kagda, M Abrahamian… - PLoS …, 2019 - journals.plos.org
The use of host nutrients to support pathogen growth is central to disease. We addressed
the relationship between metabolism and trophic behavior by comparing metabolic gene …

Conserved subgroups of the plant-specific RWP-RK transcription factor family are present in oomycete pathogens

M Yin, Z Zhang, M Xuan, H Feng, W Ye… - Frontiers in …, 2020 - frontiersin.org
Nitrogen is a major constituent of proteins, chlorophyll, nucleotides, and hormones and has
profound effects on plant growth and productivity. RWP-RK family transcription factors (TFs) …

Comparative analysis of oomycete genome evolution using the oomycete gene order browser (OGOB)

J McGowan, KP Byrne… - Genome biology and …, 2019 - academic.oup.com
The oomycetes are a class of microscopic, filamentous eukaryotes within the stramenopiles–
alveolates–rhizaria eukaryotic supergroup. They include some of the most destructive …

Draft Genome Sequence for the Tree Pathogen Phytophthora plurivora

RR Vetukuri, S Tripathy, M Malar C… - Genome biology and …, 2018 - academic.oup.com
Species from the genus Phytophthora are well represented among organisms causing
serious diseases on trees. Phytophthora plurivora has been implicated in long-term decline …

Characterization of phenotypic variation and genome aberrations observed among Phytophthora ramorum isolates from diverse hosts

M Elliott, J Yuzon, S Tripathy, M Bui, GA Chastagner… - BMC genomics, 2018 - Springer
Background Accumulating evidence suggests that genome plasticity allows filamentous
plant pathogens to adapt to changing environments. Recently, the generalist plant pathogen …

Oomycete Gene Table: an online database for comparative genomic analyses of the oomycete microorganisms

T Rujirawat, P Patumcharoenpol, W Kittichotirat… - Database, 2019 - academic.oup.com
Oomycetes form a unique group of the fungal-like, aquatic, eukaryotic microorganisms.
Lifestyle and pathogenicity of the oomycetes are diverse. Many pathogenic oomycetes affect …

Haplotype-Phased Genome Assembly of Virulent Phytophthora ramorum Isolate ND886 Facilitated by Long-Read Sequencing Reveals Effector Polymorphisms and …

M Malar C, JD Yuzon, S Das, A Das… - Molecular Plant …, 2019 - Am Phytopath Society
Phytophthora ramorum is a destructive pathogen that causes sudden oak death disease.
The genome sequence of P. ramorum isolate Pr102 was previously produced, using Sanger …