Imaging in systems biology

SG Megason, SE Fraser - Cell, 2007 - cell.com
Most systems biology approaches involve determining the structure of biological circuits
using genomewide"-omic" analyses. Yet imaging offers the unique advantage of watching …

Reconstructing embryonic development

K Khairy, PJ Keller - genesis, 2011 - Wiley Online Library
Novel approaches to bio‐imaging and automated computational image processing allow the
design of truly quantitative studies in developmental biology. Cell behavior, cell fate …

The notochord gene regulatory network in chordate evolution: Conservation and divergence from Ciona to vertebrates

A Di Gregorio - Current Topics in Developmental Biology, 2020 - Elsevier
The notochord is a structure required for support and patterning of all chordate embryos,
from sea squirts to humans. An increasing amount of information on notochord development …

Epithelial type, ingression, blastopore architecture and the evolution of chordate mesoderm morphogenesis

DR Shook, R Keller - Journal of Experimental Zoology Part B …, 2008 - Wiley Online Library
Chordate embryos show an evolutionary trend in the mechanisms they use to internalize
presumptive mesoderm, relying predominantly on invagination in the basal chordates …

Encoding anatomy: developmental gene regulatory networks and morphogenesis

CA Ettensohn - genesis, 2013 - Wiley Online Library
A central challenge of developmental and evolutionary biology is to explain how anatomy is
encoded in the genome. Anatomy emerges progressively during embryonic development …

Dynamics of Drosophila endoderm specification

SE Keenan, M Avdeeva, L Yang… - Proceedings of the …, 2022 - National Acad Sciences
During early Drosophila embryogenesis, a network of gene regulatory interactions
orchestrates terminal patterning, playing a critical role in the subsequent formation of the gut …

Direct activation of a notochord cis-regulatory module by Brachyury and FoxA in the ascidian Ciona intestinalis

YJ Passamaneck, L Katikala, L Perrone… - …, 2009 - journals.biologists.com
The notochord is a defining feature of the chordate body plan. Experiments in ascidian, frog
and mouse embryos have shown that co-expression of Brachyury and FoxA class …

[HTML][HTML] BMP signaling coordinates gene expression and cell migration during precardiac mesoderm development

L Christiaen, A Stolfi, M Levine - Developmental biology, 2010 - Elsevier
Gene regulatory networks control the progressive specification of cell types and govern
morphogenetic events during development. However, how morphogenetic events …

Cellular morphogenesis in ascidians: how to shape a simple tadpole

E Munro, F Robin, P Lemaire - Current opinion in genetics & development, 2006 - Elsevier
Ascidians are invertebrate chordates that form tadpole larvae with a surprisingly small
number of cells. Recently, the emergence of powerful molecular tools to study cell fate …

Quantitative and in toto imaging in ascidians: working toward an image‐centric systems biology of chordate morphogenesis

M Veeman, W Reeves - genesis, 2015 - Wiley Online Library
Developmental biology relies heavily on microscopy to image the finely controlled cell
behaviors that drive embryonic development. Most embryos are large enough that a field of …