Reuse of public genome-wide gene expression data

J Rung, A Brazma - Nature Reviews Genetics, 2013 - nature.com
Our understanding of gene expression has changed dramatically over the past decade,
largely catalysed by technological developments. High-throughput experiments …

The ipd-imgt/hla database

DJ Barker, G Maccari, X Georgiou… - Nucleic acids …, 2023 - academic.oup.com
It is 24 years since the IPD-IMGT/HLA Database, http://www. ebi. ac. uk/ipd/imgt/hla/, was
first released, providing the HLA community with a searchable repository of highly curated …

[HTML][HTML] Marine metagenomics as a source for bioprospecting

R Kodzius, T Gojobori - Marine genomics, 2015 - Elsevier
This review summarizes usage of genome-editing technologies for metagenomic studies;
these studies are used to retrieve and modify valuable microorganisms for production …

The Sequence Read Archive: explosive growth of sequencing data

Y Kodama, M Shumway, R Leinonen - Nucleic acids research, 2012 - academic.oup.com
New generation sequencing platforms are producing data with significantly higher
throughput and lower cost. A portion of this capacity is devoted to individual and community …

The imgt/hla database

J Robinson, JA Halliwell, H McWilliam… - Nucleic acids …, 2012 - academic.oup.com
It is 14 years since the IMGT/HLA database was first released, providing the HLA community
with a searchable repository of highly curated HLA sequences. The HLA complex is located …

ArrayExpress update—trends in database growth and links to data analysis tools

G Rustici, N Kolesnikov, M Brandizi… - Nucleic acids …, 2012 - academic.oup.com
Abstract The ArrayExpress Archive of Functional Genomics Data (http://www. ebi. ac.
uk/arrayexpress) is one of three international functional genomics public data repositories …

[HTML][HTML] Extensive strain-level copy-number variation across human gut microbiome species

S Greenblum, R Carr, E Borenstein - Cell, 2015 - cell.com
Within each bacterial species, different strains may vary in the set of genes they encode or in
the copy number of these genes. Yet, taxonomic characterization of the human microbiota is …

The 2012 nucleic acids research database issue and the online molecular biology database collection

MY Galperin, XM Fernández-Suarez - Nucleic acids research, 2012 - academic.oup.com
Abstract The 19th annual Database Issue of Nucleic Acids Research features descriptions of
92 new online databases covering various areas of molecular biology and 100 papers …

The IPD-IMGT/HLA Database–New developments in reporting HLA variation

J Robinson, AR Soormally, JD Hayhurst, SGE Marsh - Human immunology, 2016 - Elsevier
Abstract IPD-IMGT/HLA is a constituent of the Immuno Polymorphism Database (IPD), which
was developed to provide a centralised system for the study of polymorphism in genes of the …

DoBISCUIT: a database of secondary metabolite biosynthetic gene clusters

N Ichikawa, M Sasagawa, M Yamamoto… - Nucleic acids …, 2012 - academic.oup.com
Abstract This article introduces DoBISCUIT (Database of BIoSynthesis clusters CUrated and
InTegrated, http://www. bio. nite. go. jp/pks/), a literature-based, manually curated database …