A decade of structural variants: description, history and methods to detect structural variation

G Escaramís, E Docampo… - Briefings in functional …, 2015 - academic.oup.com
In the past decade, the view on genomic structural variation (SV) has been changed
completely. SVs, previously considered rare events, are now recognized as the largest …

Copy number variation in the genomes of domestic animals

A Clop, O Vidal, M Amills - Animal genetics, 2012 - Wiley Online Library
Copy number variation (CNV) might be one of the main contributors to phenotypic diversity
and evolutionary adaptation in animals and plants, employing a wide variety of mechanisms …

Copy number variation of individual cattle genomes using next-generation sequencing

DM Bickhart, Y Hou, SG Schroeder, C Alkan… - Genome …, 2012 - genome.cshlp.org
Copy number variations (CNVs) affect a wide range of phenotypic traits; however, CNVs in
or near segmental duplication regions are often intractable. Using a read depth approach …

Whole genome resequencing of black Angus and Holstein cattle for SNP and CNV discovery

P Stothard, JW Choi, U Basu, JM Sumner-Thomson… - BMC genomics, 2011 - Springer
Background One of the goals of livestock genomics research is to identify the genetic
differences responsible for variation in phenotypic traits, particularly those of economic …

Genomic characteristics of cattle copy number variations

Y Hou, GE Liu, DM Bickhart, MF Cardone, K Wang… - BMC genomics, 2011 - Springer
Background Copy number variation (CNV) represents another important source of genetic
variation complementary to single nucleotide polymorphism (SNP). High-density SNP array …

An initial comparative map of copy number variations in the goat (Capra hircus) genome

L Fontanesi, PL Martelli, F Beretti, V Riggio, S Dall'Olio… - BMC genomics, 2010 - Springer
Abstract Background The goat (Capra hircus) represents one of the most important farm
animal species. It is reared in all continents with an estimated world population of about 800 …

Genome-wide detection of CNVs in Chinese indigenous sheep with different types of tails using ovine high-density 600K SNP arrays

C Zhu, H Fan, Z Yuan, S Hu, X Ma, J Xuan, H Wang… - Scientific reports, 2016 - nature.com
Chinese indigenous sheep can be classified into three types based on tail morphology: fat-
tailed, fat-rumped, and thin-tailed sheep, of which the typical breeds are large-tailed Han …

[HTML][HTML] A first comparative map of copy number variations in the sheep genome

L Fontanesi, F Beretti, PL Martelli, M Colombo… - Genomics, 2011 - Elsevier
We carried out a cross species cattle–sheep array comparative genome hybridization
experiment to identify copy number variations (CNVs) in the sheep genome analysing ewes …

Genome-wide detection of copy number variations using high-density SNP genotyping platforms in Holsteins

L Jiang, J Jiang, J Yang, X Liu, J Wang, H Wang… - BMC genomics, 2013 - Springer
Abstract Background Copy number variations (CNVs) are widespread in the human or
animal genome and are a significant source of genetic variation, which has been …

Analysis of copy number variations in the sheep genome using 50K SNP BeadChip array

J Liu, L Zhang, L Xu, H Ren, J Lu, X Zhang, S Zhang… - BMC genomics, 2013 - Springer
Background In recent years, genome-wide association studies have successfully uncovered
single-nucleotide polymorphisms (SNPs) associated with complex traits such as diseases …