Factors determining the susceptibility of fish to effects of human pharmaceuticals

C Matthee, AR Brown, A Lange… - Environmental science & …, 2023 - ACS Publications
The increasing levels and frequencies at which active pharmaceutical ingredients (APIs) are
being detected in the environment are of significant concern, especially considering the …

Advances and applications in the quest for orthologs

N Glover, C Dessimoz, I Ebersberger… - Molecular biology …, 2019 - academic.oup.com
Gene families evolve by the processes of speciation (creating orthologs), gene duplication
(paralogs), and horizontal gene transfer (xenologs), in addition to sequence divergence and …

OrthoVenn2: a web server for whole-genome comparison and annotation of orthologous clusters across multiple species

L Xu, Z Dong, L Fang, Y Luo, Z Wei, H Guo… - Nucleic acids …, 2019 - academic.oup.com
OrthoVenn is a powerful web platform for the comparison and analysis of whole-genome
orthologous clusters. Here we present an updated version, OrthoVenn2, which provides new …

New tools in orthology analysis: a brief review of promising perspectives

BTL Nichio, JN Marchaukoski, RT Raittz - Frontiers in genetics, 2017 - frontiersin.org
Nowadays defying homology relationships among sequences is essential for biological
research. Within homology the analysis of orthologs sequences is of great importance for …

The Quest for Orthologs benchmark service and consensus calls in 2020

AM Altenhoff, J Garrayo-Ventas… - Nucleic acids …, 2020 - academic.oup.com
The identification of orthologs—genes in different species which descended from the same
gene in their last common ancestor—is a prerequisite for many analyses in comparative …

Updates to HCOP: the HGNC comparison of orthology predictions tool

B Yates, KA Gray, TEM Jones… - Briefings in …, 2021 - academic.oup.com
Multiple resources currently exist that predict orthologous relationships between genes.
These resources differ both in the methodologies used and in the species they make …

Genomewide identification of genes involved in the potato response to drought indicates functional evolutionary conservation with Arabidopsis plants

M Pieczynski, A Wyrzykowska… - Plant biotechnology …, 2018 - Wiley Online Library
Potato is one of the four most important food crop plants worldwide and is strongly affected
by drought. The following two pairs of potato cultivars, which are related in ancestry but …

GP4: an integrated Gram-Positive Protein Prediction Pipeline for subcellular localization mimicking bacterial sorting

S Grasso, T van Rij, JM van Dijl - Briefings in Bioinformatics, 2021 - academic.oup.com
Subcellular localization is a critical aspect of protein function and the potential application of
proteins either as drugs or drug targets, or in industrial and domestic applications. However …

Knowledge rich natural language queries over structured biological databases

HM Jamil - Proceedings of the 8th ACM International Conference …, 2017 - dl.acm.org
Increasingly, keyword, natural language and NoSQL queries are used for information
retrieval from both traditional and non-traditional databases such as web, document, GIS …

Annotation and profiling of barley GLYCOGEN SYNTHASE3/Shaggy-like genes indicated shift in organ-preferential expression

J Groszyk, Y Yanushevska, A Zielezinski… - PLoS …, 2018 - journals.plos.org
GLYCOGEN SYNTHASE KINASE3/Shaggy-like kinases (GSKs) represent a highly
conserved group of proteins found in all eukaryotes. In plants they are encoded by …