The identification and functional annotation of RNA structures conserved in vertebrates
SE Seemann, AH Mirza, C Hansen… - Genome …, 2017 - genome.cshlp.org
Structured elements of RNA molecules are essential in, eg, RNA stabilization, localization,
and protein interaction, and their conservation across species suggests a common …
and protein interaction, and their conservation across species suggests a common …
Translational co-regulation of a ligand and inhibitor by a conserved RNA element
In many organisms, transcriptional and post-transcriptional regulation of components of
pathways or processes has been reported. However, to date, there are few reports of …
pathways or processes has been reported. However, to date, there are few reports of …
Relative Information Gain: Shannon entropy-based measure of the relative structural conservation in RNA alignments
Structural characterization of RNAs is a dynamic field, offering many modelling possibilities.
RNA secondary structure models are usually characterized by an encoding that depicts …
RNA secondary structure models are usually characterized by an encoding that depicts …
Multiple sequence alignments enhance boundary definition of RNA structures
Self-contained structured domains of RNA sequences have often distinct molecular
functions. Determining the boundaries of structured domains of a non-coding RNA (ncRNA) …
functions. Determining the boundaries of structured domains of a non-coding RNA (ncRNA) …
NetREX: Network Rewiring using EXpression-Towards Context Specific Regulatory Networks
Understanding gene regulation is a fundamental step towards understanding of how cells
function and respond to environmental cues and perturbations. An important step in this …
function and respond to environmental cues and perturbations. An important step in this …